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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Abetalipoproteinemia Fatty liver
1 gene
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1 of 1 corroborated by 2+ sources
MTTP(3)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Corticosteroid-binding globulin deficiency Fatty liver
1 gene
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1 of 1 corroborated by 2+ sources
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Digestive system disease nephrotic syndrome 14
1 gene
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1 of 1 corroborated by 2+ sources
SGPL1(2)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Digestive system disease nizon-isidor syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MED12L(2)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Digestive system disease Dock2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DOCK2(4)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
congenital disorder of glycosylation, type iit Fatty liver
1 gene
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1 of 1 corroborated by 2+ sources
GALNT2(2)
0.011 1.000 6.04e-3 7.27e-3 ✓ sig. —
Congenital microcephaly Pseudo-torch syndrome
1 gene
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1 of 1 corroborated by 2+ sources
OCLN(6)
0.029 0.333 6.03e-3 7.26e-3 ✓ sig. —
Distal spinal muscular atrophy multiple acyl-CoA dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ETFDH(2)
0.029 0.333 6.03e-3 7.26e-3 ✓ sig. Cluster 15 →
Auditory neuropathy Genetic neurodegenerative disease
1 gene
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KIF5A(1)
0.029 0.333 6.03e-3 7.26e-3 ✓ sig. —
Chromosomal disorder Nasal disorder
1 gene
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COBL(1)
0.037 0.250 5.96e-3 7.19e-3 ✓ sig. —
Primary hypertrophic osteoarthropathy Thyroid neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
HPGD(6)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Cerebral palsy Congenital anosmia
1 gene
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1 of 1 corroborated by 2+ sources
TENM1(2)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Camptodactyly-arthropathy-coxa vara-pericarditis syndrome Thyroid neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
TPR(2)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Anosmia Cerebral palsy
1 gene
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1 of 1 corroborated by 2+ sources
TENM1(2)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Aortic valve stenosis Retinal detachment
1 gene
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ANKRD7(1)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Intellectual developmental disorder seizures speech Thyroid neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PAK1(4)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Urticaria Vitreous body disease
1 gene
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CNTRL(1)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Autonomic nervous system disease Immune system disease
1 gene
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ELMO1(1)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. Cluster 1 →
Encephalopathy due to mitochondrial and peroxisomal fission defect Ventricular dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
MFF(2)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Conjunctival disease Myelodysplastic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DAPK1(2)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Myelodysplastic syndrome Temple syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLK1(3)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
Hemorrhagic stroke Thyroid neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
PDGFA(2)
0.021 0.500 5.97e-3 7.19e-3 ✓ sig. —
ciliary dyskinesia, primary, 47, and lissencephaly Small cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TP73(2)
0.011 1.000 5.91e-3 7.12e-3 ✓ sig. —
Sialidosis Small cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
NEU1(6)
0.011 1.000 5.91e-3 7.12e-3 ✓ sig. —
Congenital sialidosis Small cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
NEU1(3)
0.011 1.000 5.91e-3 7.12e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.