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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Connective tissue disease mend syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EBP(2)
0.008 1.000 7.60e-3 8.90e-3 ✓ sig. —
multiple endocrine neoplasia type 1 Pancreatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
MEN1(2)
0.008 1.000 7.60e-3 8.90e-3 ✓ sig. —
Connective tissue disease Multiple epiphyseal dysplasia with early-onset diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK3(2)
0.008 1.000 7.60e-3 8.90e-3 ✓ sig. —
Congenital tufting enteropathy Pancreatic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
EPCAM(2)
0.008 1.000 7.60e-3 8.90e-3 ✓ sig. —
Connective tissue disease schneckenbecken dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
SLC35D1(2)
0.008 1.000 7.60e-3 8.90e-3 ✓ sig. Cluster 12 →
Connective tissue disease short stature, amelogenesis imperfecta, and skeletal dysplasia with scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC10A7(2)
0.008 1.000 7.60e-3 8.90e-3 ✓ sig. —
Connective tissue disease spondyloepimetaphyseal dysplasia-short limb-abnormal calcification syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DDR2(2)
0.008 1.000 7.60e-3 8.90e-3 ✓ sig. —
3mc syndrome Nasal polyp
1 gene
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COLEC10(1)
0.024 0.333 7.58e-3 8.88e-3 ✓ sig. —
Carpenter syndrome Polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
MEGF8(3)
0.024 0.333 7.58e-3 8.88e-3 ✓ sig. —
Malpuech facial clefting syndrome Nasal polyp
1 gene
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1 of 1 corroborated by 2+ sources
COLEC10(3)
0.024 0.333 7.58e-3 8.88e-3 ✓ sig. —
Cannabis abuse short chain acyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACADS(2)
0.009 1.000 7.53e-3 8.83e-3 ✓ sig. —
Cannabis abuse Dorfman-chanarin disease
1 gene
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1 of 1 corroborated by 2+ sources
ABHD5(3)
0.009 1.000 7.53e-3 8.83e-3 ✓ sig. —
Cannabis abuse Cohen-gibson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EED(6)
0.009 1.000 7.53e-3 8.83e-3 ✓ sig. —
Congenital myasthenic syndrome Cystinuria
1 gene
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1 of 1 corroborated by 2+ sources
PREPL(2)
0.030 0.250 7.51e-3 8.81e-3 ✓ sig. —
CTR9-related neurodevelopmental disorder Ovarian epithelial cancer
1 gene
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1 of 1 corroborated by 2+ sources
CTR9(2)
0.009 1.000 7.47e-3 8.76e-3 ✓ sig. —
Ovarian epithelial cancer Riboflavin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC52A1(4)
0.009 1.000 7.47e-3 8.76e-3 ✓ sig. —
Lymphocytic leukemia Sebaceous gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
LEF1(2)
0.009 1.000 7.47e-3 8.76e-3 ✓ sig. —
Lymphocytic leukemia severe combined immunodeficiency due to CD70 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD70(2)
0.009 1.000 7.47e-3 8.76e-3 ✓ sig. —
Lymphocytic leukemia Short stature skeletal dysplasia retinal degeneration intellectual disability hearing loss syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PISD(3)
0.009 1.000 7.47e-3 8.76e-3 ✓ sig. —
Congenital neurologic anomalies SRD5A3-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
SRD5A3(2)
0.009 1.000 7.47e-3 8.76e-3 ✓ sig. —
Congenital neurologic anomalies Guanidinoacetate methyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GAMT(3)
0.009 1.000 7.47e-3 8.76e-3 ✓ sig. —
Congenital neurologic anomalies hereditary spastic paraplegia 18
1 gene
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1 of 1 corroborated by 2+ sources
ERLIN2(2)
0.009 1.000 7.47e-3 8.76e-3 ✓ sig. —
hermansky-pudlak syndrome 7 Non-small cell lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
DTNBP1(2)
0.009 1.000 7.47e-3 8.76e-3 ✓ sig. —
Childhood-onset autosomal recessive slowly progressive spinocerebellar ataxia Congenital neurologic anomalies
1 gene
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1 of 1 corroborated by 2+ sources
TPP1(2)
0.009 1.000 7.47e-3 8.76e-3 ✓ sig. —
Choreoacanthocytosis Congenital neurologic anomalies
1 gene
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1 of 1 corroborated by 2+ sources
VPS13A(3)
0.009 1.000 7.47e-3 8.76e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.