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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Neurodevelopmental disorder with epilepsy, cataracts, feeding difficulties, and delayed brain myelination Obesity
1 gene
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1 of 1 corroborated by 2+ sources
NACC1(3)
0.001 1.000 7.75e-2 7.86e-2 —
Neurodevelopmental disorder Neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties
1 gene
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1 of 1 corroborated by 2+ sources
DPH5(6)
0.001 1.000 6.50e-2 6.62e-2 —
Neurodevelopmental disorder Neurodevelopmental disorder with feeding difficulties, thin corpus callosum, and foot deformity
1 gene
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1 of 1 corroborated by 2+ sources
TAF2(4)
0.001 1.000 6.50e-2 6.62e-2 —
Neurodevelopmental disorder Neurodevelopmental disorder with epilepsy, cataracts, feeding difficulties, and delayed brain myelination
1 gene
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1 of 1 corroborated by 2+ sources
NACC1(7)
0.001 1.000 6.50e-2 6.62e-2 —
Intellectual developmental disorder Neurodevelopmental disorder with feeding difficulties, thin corpus callosum, and foot deformity
1 gene
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1 of 1 corroborated by 2+ sources
TAF2(3)
0.001 1.000 5.26e-2 5.42e-2 —
Crohn disease Neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties
1 gene
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1 of 1 corroborated by 2+ sources
DPH5(3)
0.001 1.000 4.53e-2 4.69e-2 ✓ sig. Cluster 205 →
Neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties Ulcerative colitis
1 gene
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1 of 1 corroborated by 2+ sources
DPH5(3)
0.001 1.000 4.51e-2 4.66e-2 ✓ sig. Cluster 205 →
Inflammatory bowel disease Neurodevelopmental disorder with short stature, prominent forehead, and feeding difficulties
1 gene
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1 of 1 corroborated by 2+ sources
DPH5(3)
0.001 1.000 4.48e-2 4.64e-2 ✓ sig. Cluster 205 →
Epilepsy Neurodevelopmental disorder with neonatal respiratory insufficiency, hypotonia, and feeding difficulties
1 gene
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1 of 1 corroborated by 2+ sources
PURA(3)
0.004 1.000 1.76e-2 1.90e-2 ✓ sig. —
Myelodysplastic syndrome Neurodevelopmental disorder with feeding difficulties, thin corpus callosum, and foot deformity
1 gene
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1 of 1 corroborated by 2+ sources
TAF2(2)
0.004 1.000 1.66e-2 1.80e-2 ✓ sig. —
Developmental and epileptic encephalopathy Neurodevelopmental disorder with neonatal respiratory insufficiency, hypotonia, and feeding difficulties
1 gene
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1 of 1 corroborated by 2+ sources
PURA(2)
0.004 1.000 1.49e-2 1.63e-2 ✓ sig. —
Microcephaly Neurodevelopmental disorder with feeding difficulties, thin corpus callosum, and foot deformity
1 gene
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1 of 1 corroborated by 2+ sources
TAF2(4)
0.006 1.000 1.03e-2 1.14e-2 ✓ sig. Cluster 54 →
Complex neurodevelopmental disorder Neurodevelopmental disorder with neonatal respiratory insufficiency, hypotonia, and feeding difficulties
1 gene
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1 of 1 corroborated by 2+ sources
PURA(2)
0.007 1.000 8.65e-3 9.79e-3 ✓ sig. —
Congenital neurologic anomalies Neurodevelopmental disorder with neonatal respiratory insufficiency, hypotonia, and feeding difficulties
1 gene
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1 of 1 corroborated by 2+ sources
PURA(2)
0.009 1.000 7.43e-3 8.57e-3 ✓ sig. —
Feeding difficulties Syndromic intellectual disability resembling other pp2a related neurodevelopmental disorders
1 gene
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PPP2CA(1)
0.111 1.000 5.17e-4 9.13e-4 ✓ sig. —
Feeding difficulties Neurodevelopmental disorder with hypotonia and variable intellectual and behavioral abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
POLR2A(2)
0.111 1.000 5.17e-4 9.13e-4 ✓ sig. —
Feeding difficulties Neurodevelopmental disorder and language delay with or without structural brain abnormalities
1 gene
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PPP2CA(1)
0.111 1.000 5.17e-4 9.13e-4 ✓ sig. —
Feeding difficulties Language impairment
1 gene
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PPP2CA(1)
0.111 1.000 5.17e-4 9.13e-4 ✓ sig. —
Feeding difficulties Growth abnormality
1 gene
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ZMIZ1(1)
0.111 1.000 5.17e-4 9.13e-4 ✓ sig. —
Feeding difficulties Li-ghorgani-weisz-hubshman syndrome
1 gene
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KAT8(1)
0.111 1.000 5.17e-4 9.13e-4 ✓ sig. —
Combined lung carcinoma Feeding difficulties
1 gene
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POLR2A(1)
0.111 1.000 5.17e-4 9.13e-4 ✓ sig. —
Basilicata-akhtar syndrome Feeding difficulties
1 gene
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1 of 1 corroborated by 2+ sources
MSL3(2)
0.111 1.000 5.17e-4 9.13e-4 ✓ sig. —
Abnormality of the foot Feeding difficulties
1 gene
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SMARCD1(1)
0.111 1.000 5.17e-4 9.13e-4 ✓ sig. —
Mental retardation, autosomal dominant 31 Neurodevelopmental disorder with neonatal respiratory insufficiency, hypotonia, and feeding difficulties
1 gene
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PURA(1)
0.500 1.000 6.46e-5 1.98e-4 ✓ sig. —
Infantile epilepsy, cataracts, and profound developmental delay Neurodevelopmental disorder with epilepsy, cataracts, feeding difficulties, and delayed brain myelination
1 gene
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1 of 1 corroborated by 2+ sources
NACC1(2)
0.500 1.000 6.46e-5 1.98e-4 ✓ sig. —

Showing 25 of 28 matching pairs, sorted by significance (descending). Click a column header to sort.