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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
leukodystrophy, hypomyelinating, 18 Skin disease
1 gene
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1 of 1 corroborated by 2+ sources
DEGS1(2)
0.006 1.000 1.15e-2 1.29e-2 ✓ sig. —
COG6-congenital disorder of glycosylation Peripheral arterial disease
1 gene
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1 of 1 corroborated by 2+ sources
COG6(2)
0.006 1.000 1.15e-2 1.29e-2 ✓ sig. —
Hypochromic sideroblastic anemia Skin disease
1 gene
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1 of 1 corroborated by 2+ sources
STEAP3(6)
0.006 1.000 1.15e-2 1.29e-2 ✓ sig. —
Hemorrhoid Myoadenylate deaminase deficiency
1 gene
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AMPD3(1)
0.011 0.500 1.15e-2 1.29e-2 ✓ sig. —
Congestive heart failure Hmg-coa synthase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
HMGCS2(4)
0.006 1.000 1.16e-2 1.31e-2 ✓ sig. —
Congestive heart failure hyperphosphatasia with intellectual disability syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
PGAP3(2)
0.006 1.000 1.16e-2 1.31e-2 ✓ sig. —
Congestive heart failure Yoon-bellen neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
OGDHL(3)
0.006 1.000 1.16e-2 1.31e-2 ✓ sig. —
Acetyl-coa carboxylase deficiency Congestive heart failure
1 gene
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1 of 1 corroborated by 2+ sources
ACACA(2)
0.006 1.000 1.16e-2 1.31e-2 ✓ sig. —
Congestive heart failure short chain acyl-coa dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACADS(2)
0.006 1.000 1.16e-2 1.31e-2 ✓ sig. —
Charcot-Marie-Tooth disease type 4B2 Congestive heart failure
1 gene
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1 of 1 corroborated by 2+ sources
SBF2(2)
0.006 1.000 1.16e-2 1.31e-2 ✓ sig. —
Claudication Congestive heart failure
1 gene
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AGXT2(1)
0.006 1.000 1.16e-2 1.31e-2 ✓ sig. —
Congestive heart failure phosphoenolpyruvate carboxykinase deficiency, cytosolic
1 gene
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1 of 1 corroborated by 2+ sources
PCK1(2)
0.006 1.000 1.16e-2 1.31e-2 ✓ sig. —
Beta-aminoisobutyric aciduria Congestive heart failure
1 gene
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1 of 1 corroborated by 2+ sources
AGXT2(3)
0.006 1.000 1.16e-2 1.31e-2 ✓ sig. —
Multiple system atrophy Renal pelvis neoplasms
1 gene
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MDGA2(1)
0.028 0.167 1.16e-2 1.31e-2 ✓ sig. —
Microphthalmos Peripheral vertigo
1 gene
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1 of 1 corroborated by 2+ sources
ZNF91(2)
0.024 0.200 1.16e-2 1.31e-2 ✓ sig. —
Central vertigo Microphthalmos
1 gene
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1 of 1 corroborated by 2+ sources
ZNF91(2)
0.024 0.200 1.16e-2 1.31e-2 ✓ sig. —
Gestational diabetes Urofacial syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HPSE2(5)
0.011 0.500 1.17e-2 1.31e-2 ✓ sig. —
Gestational diabetes Ochoa syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HPSE2(2)
0.011 0.500 1.17e-2 1.31e-2 ✓ sig. —
Gestational diabetes Intellectual developmental disorder speech peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
NEMF(5)
0.011 0.500 1.17e-2 1.31e-2 ✓ sig. Cluster 73 →
joubert syndrome 21 Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
CSPP1(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
LCA5-related retinopathy Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
LCA5(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
leber-like hereditary optic neuropathy, autosomal recessive 1 Optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC30(2)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
Optic atrophy optic atrophy 10 with or without ataxia, intellectual disability, and seizures
1 gene
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1 of 1 corroborated by 2+ sources
RTN4IP1(7)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. —
Optic atrophy optic atrophy 11
1 gene
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1 of 1 corroborated by 2+ sources
YME1L1(7)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. Cluster 7 →
Optic atrophy optic atrophy 15
1 gene
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1 of 1 corroborated by 2+ sources
MCAT(6)
0.005 1.000 1.18e-2 1.32e-2 ✓ sig. Cluster 7 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.