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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Adenine phosphoribosyltransferase deficiency Renal cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
APRT(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Adenosine kinase deficiency Pelvic organ prolapse
1 gene
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1 of 1 corroborated by 2+ sources
ADK(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Allan-herndon-dudley syndrome Cholelithiasis
1 gene
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1 of 1 corroborated by 2+ sources
SLC16A2(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Aplasia and myelodysplasia Cholelithiasis
1 gene
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1 of 1 corroborated by 2+ sources
SRP72(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Erythrocyte udp-galactose-4-epimerase deficiency Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
GALE(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Expressive language delay Pelvic organ prolapse
1 gene
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1 of 1 corroborated by 2+ sources
KLF7(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
FADD-related immunodeficiency Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
FADD(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
fanconi anemia complementation group i Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
FANCI(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
FNIP1-associated syndrome Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
FNIP1(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
galactose epimerase deficiency Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
GALE(4)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Ghosal hematodiaphyseal dysplasia Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
TBXAS1(7)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Colorectal adenoma glycosylphosphatidylinositol biosynthesis defect 21
1 gene
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1 of 1 corroborated by 2+ sources
PIGU(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
granulocytopenia with immunoglobulin abnormality Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
HYOU1(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
gray platelet syndrome Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
NBEAL2(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Congenital small-platelet thrombocytopenia Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
FYB1(7)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Colorectal adenoma Craniometadiaphyseal osteosclerosis with hip dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
AXIN1(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Cutis marmorata Immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
TPP2(5)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Cutis marmorata Thrombocytopenia
1 gene
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TPP2(1)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Cholelithiasis hemochromatosis type 2A
1 gene
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1 of 1 corroborated by 2+ sources
HJV(3)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Colorectal adenoma hereditary mixed polyposis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GREM1(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 20 →
hereditary sclerosing poikiloderma with tendon and pulmonary involvement Renal cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
FAM111B(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 5 →
hermansky-pudlak syndrome 3 Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
HPS3(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
hermansky-pudlak syndrome 5 Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
HPS5(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
hermansky-pudlak syndrome 6 Thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
HPS6(2)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. —
Cholelithiasis Hyperbiliverdinemia
1 gene
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1 of 1 corroborated by 2+ sources
BLVRA(7)
0.007 1.000 9.03e-3 1.03e-2 ✓ sig. Cluster 226 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.