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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Idiopathic pulmonary fibrosis interstitial lung disease 2
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA2(5)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Idiopathic pulmonary fibrosis isovaleric acidemia
1 gene
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1 of 1 corroborated by 2+ sources
IVD(2)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Cortical dysplasia-focal epilepsy syndrome Idiopathic pulmonary fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Bone disease Craniometadiaphyseal osteosclerosis with hip dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
AXIN1(4)
0.012 1.000 5.33e-3 6.49e-3 ✓ sig. —
Age-related macular degeneration Cerebellar vermis atrophy
1 gene
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1 of 1 corroborated by 2+ sources
SYN3(2)
0.012 1.000 5.39e-3 6.57e-3 ✓ sig. —
Age-related macular degeneration neurodevelopmental disorder, nonprogressive, with spasticity and transient opisthotonus
1 gene
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1 of 1 corroborated by 2+ sources
TNR(2)
0.012 1.000 5.39e-3 6.57e-3 ✓ sig. —
Age-related macular degeneration Congenital adrenal hyperplasia due to 21-hydroxylase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP21A2(5)
0.012 1.000 5.39e-3 6.57e-3 ✓ sig. —
histidinemia Skin cancer
1 gene
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1 of 1 corroborated by 2+ sources
HAL(2)
0.012 1.000 5.39e-3 6.57e-3 ✓ sig. Cluster 29 →
Albinism Skin cancer
1 gene
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1 of 1 corroborated by 2+ sources
TPCN2(2)
0.012 1.000 5.39e-3 6.57e-3 ✓ sig. —
Age-related macular degeneration Primary angle-closure glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
SPATA13(4)
0.012 1.000 5.39e-3 6.57e-3 ✓ sig. —
Cardiofaciocutaneous syndrome Corticobasal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
SOS1(3)
0.053 0.143 5.44e-3 6.63e-3 ✓ sig. Cluster 42 →
Adrenal gland neoplasms Corneal disease
1 gene
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TCF4(1)
0.053 0.143 5.44e-3 6.63e-3 ✓ sig. Cluster 222 →
Adrenal gland neoplasms Paranoia
1 gene
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1 of 1 corroborated by 2+ sources
TCF4(2)
0.053 0.143 5.44e-3 6.63e-3 ✓ sig. Cluster 222 →
Bilirubin metabolism disease Kleine-levin syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRANK1(3)
0.053 0.143 5.44e-3 6.63e-3 ✓ sig. —
Congenital pes cavus hearing loss, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
PTPRQ(2)
0.053 0.143 5.44e-3 6.63e-3 ✓ sig. —
Adams-oliver syndrome Congenital hydrocephalus
1 gene
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1 of 1 corroborated by 2+ sources
DOCK6(3)
0.050 0.167 5.44e-3 6.63e-3 ✓ sig. —
Adams-oliver syndrome Bicuspid aortic valve
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH1(4)
0.050 0.167 5.44e-3 6.63e-3 ✓ sig. —
Brachydactyly Chromosome 2q37 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HDAC4(4)
0.040 0.250 5.44e-3 6.63e-3 ✓ sig. —
Citrullinemia Diabetic angiopathies
1 gene
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1 of 1 corroborated by 2+ sources
ASS1(7)
0.032 0.333 5.45e-3 6.63e-3 ✓ sig. —
Hypertriglyceridemia Malignant glioma
1 gene
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1 of 1 corroborated by 2+ sources
LMF1(2)
0.032 0.333 5.45e-3 6.63e-3 ✓ sig. —
Galactosialidosis Hypertriglyceridemia
1 gene
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1 of 1 corroborated by 2+ sources
PLTP(2)
0.032 0.333 5.45e-3 6.63e-3 ✓ sig. —
Hereditary parkinson disease Juvenile parkinsonism
1 gene
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1 of 1 corroborated by 2+ sources
PODXL(3)
0.032 0.333 5.45e-3 6.63e-3 ✓ sig. Cluster 256 →
Intellectual developmental disorder seizures speech Proteinuria
1 gene
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1 of 1 corroborated by 2+ sources
PAK1(4)
0.023 0.500 5.45e-3 6.63e-3 ✓ sig. Cluster 30 →
Fetal erythroblastosis Lupus nephritis
1 gene
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FCGR2A(1)
0.023 0.500 5.45e-3 6.63e-3 ✓ sig. —
Craniofacial dysplasia short stature ectodermal anomalies intellectual disability syndrome Ventricular septal defect
1 gene
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1 of 1 corroborated by 2+ sources
DPH2(2)
0.023 0.500 5.45e-3 6.63e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.