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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Charcot-Marie-Tooth disease axonal type 2Z Hereditary motor and sensory neuropathies
1 gene
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1 of 1 corroborated by 2+ sources
MORC2(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Hereditary motor and sensory neuropathies Neuralgic amyotrophy
1 gene
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1 of 1 corroborated by 2+ sources
SEPTIN9(3)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
neurodegeneration with brain iron accumulation 4 Urinary bladder cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Hereditary motor and sensory neuropathies neuropathy, hereditary sensory and autonomic, type 2A
1 gene
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1 of 1 corroborated by 2+ sources
WNK1(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Left ventricular disease neutral lipid storage myopathy
1 gene
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1 of 1 corroborated by 2+ sources
PNPLA2(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
hermansky-pudlak syndrome 4 Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
HPS4(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
hermansky-pudlak syndrome 7 Interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
DTNBP1(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Atopic dermatitis hyper-ige syndrome 6, autosomal dominant, with recurrent infections
1 gene
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1 of 1 corroborated by 2+ sources
STAT6(3)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. Cluster 16 →
Atopic dermatitis Ichthyosis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
FLG(4)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Interstitial lung disease interstitial lung disease 1
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA1(5)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Interstitial lung disease interstitial lung disease 2
1 gene
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1 of 1 corroborated by 2+ sources
SFTPA2(5)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Interstitial lung disease isovaleric acidemia
1 gene
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1 of 1 corroborated by 2+ sources
IVD(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Interstitial lung disease Laryngo-onycho-cutaneous syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LAMA3(5)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Atopic dermatitis combined immunodeficiency due to DOCK8 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DOCK8(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Congenital absence of breast with absent nipple Left ventricular disease
1 gene
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PTPRF(1)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Congenital cataract microcephaly intellectual disability syndrome Hereditary motor and sensory neuropathies
1 gene
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1 of 1 corroborated by 2+ sources
MED25(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Interstitial lung disease primary ciliary dyskinesia 28
1 gene
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1 of 1 corroborated by 2+ sources
SPAG1(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
familial isolated arrhythmogenic right ventricular dysplasia Left ventricular disease
1 gene
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1 of 1 corroborated by 2+ sources
DSC2(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. Cluster 4 →
Metaphyseal chondrodysplasia with retinitis pigmentosa Urinary bladder cancer
1 gene
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1 of 1 corroborated by 2+ sources
CWC27(5)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Atopic dermatitis Uric acid urolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
ZNF365(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. —
Hereditary motor and sensory neuropathies X-linked hereditary motor and sensory neuropathy
1 gene
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DRP2(1)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. Cluster 15 →
dilated cardiomyopathy 1CC Left ventricular disease
1 gene
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1 of 1 corroborated by 2+ sources
NEXN(2)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. Cluster 4 →
dilated cardiomyopathy 1Y Left ventricular disease
1 gene
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1 of 1 corroborated by 2+ sources
TPM1(4)
0.015 1.000 4.29e-3 5.38e-3 ✓ sig. Cluster 4 →
dilated cardiomyopathy 1W Hirschsprung disease
1 gene
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1 of 1 corroborated by 2+ sources
VCL(2)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —
Hirschsprung disease oligodontia-cancer predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AXIN2(2)
0.015 1.000 4.35e-3 5.46e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.