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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Distal spinal muscular atrophy Odontochondrodysplasia 2 with hearing loss and diabetes
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHG5(3)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Diffuse panbronchiolitis Membranous glomerulonephritis
1 gene
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1 of 1 corroborated by 2+ sources
MUCL3(4)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Discoid lupus erythematosus Hyperplasia
1 gene
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1 of 1 corroborated by 2+ sources
OGG1(2)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Distal spinal muscular atrophy Testis atrophy
1 gene
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PLEKHG5(1)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Pituitary stalk interruption syndrome Uinary system neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
WDR11(2)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Selective iga deficiency disease Vitreous body disease
1 gene
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NCKAP5(1)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Agenesis of corpus callosum Auditory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
CDH2(3)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Camptodactyly-arthropathy-coxa vara-pericarditis syndrome Hyperplasia
1 gene
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1 of 1 corroborated by 2+ sources
PRG4(6)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Seborrhea-like dermatitis with psoriasiform elements Seborrheic keratosis
1 gene
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1 of 1 corroborated by 2+ sources
TBCD(2)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Congenital microcephaly Skraban-deardorff syndrome
1 gene
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WDR62(1)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. —
Microscopic colitis Selective iga deficiency disease
1 gene
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CLEC16A(1)
0.030 0.500 4.02e-3 5.09e-3 ✓ sig. Cluster 360 →
microcephalic osteodysplastic primordial dwarfism type II Moyamoya disease
1 gene
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1 of 1 corroborated by 2+ sources
PCNT(3)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
autosomal dominant cerebellar ataxia Moyamoya disease
1 gene
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1 of 1 corroborated by 2+ sources
NPTX1(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Cystic fibrosis immunodeficiency 97 with autoinflammation
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CG(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Intestinal dysmotility syndrome Moyamoya disease
1 gene
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1 of 1 corroborated by 2+ sources
ANO1(5)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 4B2 Moyamoya disease
1 gene
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1 of 1 corroborated by 2+ sources
SBF2(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
glutaric acidemia type 3 Moyamoya disease
1 gene
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1 of 1 corroborated by 2+ sources
SUGCT(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Aortic aneurysm Growth restriction, hypoplastic kidneys, alopecia, and distinctive facies
1 gene
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1 of 1 corroborated by 2+ sources
ZPR1(4)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Cystic fibrosis systemic lupus erythematosus, susceptibility to, 1
1 gene
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1 of 1 corroborated by 2+ sources
TLR5(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Cystic fibrosis POLE-related polyposis and colorectal cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLE(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Aortic aneurysm neonatal/infantile epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNH5(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. Cluster 12 →
Aortic aneurysm Bladder dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA3(3)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Aortic aneurysm Urinary bladder dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA3(3)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Aortic aneurysm Winchester syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MMP14(5)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —
Aortic aneurysm aortic valve disease 3
1 gene
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1 of 1 corroborated by 2+ sources
ROBO4(2)
0.016 1.000 4.03e-3 5.09e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.