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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital cartilage disorder Smith-mccort dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
DYM(6)
0.031 0.500 3.89e-3 4.94e-3 ✓ sig. —
Burn-mckeown syndrome Hypomyelinating leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
POLR1A(5)
0.031 0.500 3.89e-3 4.94e-3 ✓ sig. —
Lig4 syndrome Spondylosis
1 gene
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1 of 1 corroborated by 2+ sources
LIG4(5)
0.031 0.500 3.89e-3 4.94e-3 ✓ sig. —
Dubowitz syndrome Spondylosis
1 gene
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1 of 1 corroborated by 2+ sources
LIG4(3)
0.031 0.500 3.89e-3 4.94e-3 ✓ sig. —
Early-onset calcifying leukoencephalopathy-skeletal dysplasia Frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
CSF1R(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Cleft palate periventricular nodular heterotopia 7
1 gene
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1 of 1 corroborated by 2+ sources
NEDD4L(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia Primary angle-closure glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
SPATA13(4)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia pyruvate dehydrogenase E3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DLD(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Frontotemporal dementia frontotemporal dementia and/or amyotrophic lateral sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
GRN(4)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 102 →
Frontotemporal dementia frontotemporal dementia and/or amyotrophic lateral sclerosis 5
1 gene
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1 of 1 corroborated by 2+ sources
CCNF(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 102 →
Frontotemporal dementia frontotemporal dementia and/or amyotrophic lateral sclerosis 7
1 gene
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1 of 1 corroborated by 2+ sources
CHMP2B(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 102 →
Frontotemporal dementia glaucoma, normal tension, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
OPTN(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia Glutaminase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GLS(4)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
glutaric acidemia type 3 Testicular carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SUGCT(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
glutaric acidemia type 3 Testicular germ cell tumor
1 gene
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1 of 1 corroborated by 2+ sources
SUGCT(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
B-cell acute lymphoblastic leukemia granulocytopenia with immunoglobulin abnormality
1 gene
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1 of 1 corroborated by 2+ sources
HYOU1(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 3 →
Cleft palate Congenital posterior urethral valves
1 gene
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1 of 1 corroborated by 2+ sources
BNC2(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Aortic stenosis Congenital progressive bone marrow failure-b-cell immunodeficiency-skeletal dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYSM1(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Congenital cataract Coralliform cataract
1 gene
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1 of 1 corroborated by 2+ sources
CRYGD(3)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. Cluster 43 →
Congenital cataract Deafness with cataract, intellectual disability, and polyneuropathy
1 gene
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1 of 1 corroborated by 2+ sources
PSMC3(4)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Abruzzo-erickson syndrome Cleft palate
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
amyotrophic lateral sclerosis type 10 Frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
TARDBP(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
amyotrophic lateral sclerosis type 12 Frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
OPTN(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
amyotrophic lateral sclerosis type 9 Frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
ANG(2)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —
Anomalous pulmonary venous Congenital cataract
1 gene
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PSMC3(1)
0.016 1.000 3.90e-3 4.94e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.