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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Focal glomerulosclerosis spondylometaphyseal dysplasia, 'corner fracture' type
1 gene
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1 of 1 corroborated by 2+ sources
FN1(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Osteosarcoma Temple-baraitser syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNH1(5)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Corpus callosum agenesis with facial anomalies and cerebellar ataxia Dry eye syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FRMD4A(3)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Cyclic hematopoiesis Neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
ELANE(4)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Delpire-mcneill syndrome Movement disorder
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A2(4)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
hermansky-pudlak syndrome 2 Neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
AP3B1(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Cerebellar ataxia with neuropathy and bilateral vestibular areflexia Osteosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
RFC1(5)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Chromosome 2p16.3 deletion syndrome Dry eye syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NRXN1(3)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Chromosome 5q deletion syndrome Neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
RPS14(3)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Angioedema Chromosome 5q12 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PDE4D(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Neutropenia Thiopurine s-methyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TPMT(3)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. Cluster 209 →
Lymphoblastic leukemia thrombocytopenia 10
1 gene
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1 of 1 corroborated by 2+ sources
PTPRJ(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Osteosarcoma TOPORS-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TOPORS(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Diffuse large b-cell lymphoma Upper extremity deformity, congenital
1 gene
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1 of 1 corroborated by 2+ sources
EZH2(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Neutropenia White blood cell count quantitative trait locus
1 gene
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1 of 1 corroborated by 2+ sources
ACKR1(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Movement disorder Wiedemann-rautenstrauch syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLR3A(3)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Osteosarcoma X-linked dominant chondrodysplasia chassaing-lacombe type
1 gene
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1 of 1 corroborated by 2+ sources
HDAC6(5)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Diffuse large b-cell lymphoma immunodeficiency 97 with autoinflammation
1 gene
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1 of 1 corroborated by 2+ sources
PIK3CG(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
KCNH1 associated disorder Osteosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
KCNH1(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
leukemia, acute lymphoblastic, susceptibility to, 3 Lymphoblastic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
PAX5(3)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Angioedema leukodystrophy, hypomyelinating, 16
1 gene
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1 of 1 corroborated by 2+ sources
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
maturity-onset diabetes of the young type 8 Pancreatitis
1 gene
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1 of 1 corroborated by 2+ sources
CEL(3)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Aromatic l-amino-acid decarboxylase deficiency Lymphoblastic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
DDC(4)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Autoinflammation, immunodeficiency, and neutrophil dysfunction syndrome Lymphoblastic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
CEBPE(3)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
autosomal recessive osteopetrosis 3 Pancreatitis
1 gene
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1 of 1 corroborated by 2+ sources
CA2(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.