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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Combined immunodeficiency, x-linked Sezary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IL2RG(3)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Progressive supranuclear palsy Uinary system neoplasms
1 gene
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SLC2A13(1)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Aneurysm Vitreous body disease
1 gene
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NCKAP5(1)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. Cluster 12 →
Male infertility acephalic spermatozoa Teratozoospermia
1 gene
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1 of 1 corroborated by 2+ sources
PMFBP1(2)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Malonic aciduria Methylmalonic acidemia
1 gene
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1 of 1 corroborated by 2+ sources
ACSF3(2)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Dementia in huntington’s disease Hepatolenticular degeneration
1 gene
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1 of 1 corroborated by 2+ sources
PRNP(2)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Aneurysm Breast fibrocystic disease
1 gene
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CSMD1(1)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Cortical development malformation Seborrhea-like dermatitis with psoriasiform elements
1 gene
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1 of 1 corroborated by 2+ sources
TBCD(2)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Cortical development malformation Skraban-deardorff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WDR62(2)
0.034 0.500 3.50e-3 4.52e-3 ✓ sig. —
Alexander disease Non-neoplastic peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
GFAP(3)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Cerebellar cortical atrophy Non-neoplastic peripheral nervous system disease
1 gene
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MYO5A(1)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2CC Non-neoplastic peripheral nervous system disease
1 gene
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1 of 1 corroborated by 2+ sources
NEFH(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 243 →
Chops syndrome Cognition disorder
1 gene
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1 of 1 corroborated by 2+ sources
AFF4(3)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Cognition disorder Cognitive impairment-coarse facies-heart defects-obesity-pulmonary involvement-short stature-skeletal dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AFF4(4)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Autoimmunity-autoinflammation-immunodeficiency syndrome Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Autoinflammatory syndrome with immunodeficiency Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(3)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Autoinflammatory syndrome, familial, behcet-like Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
TNFAIP3(5)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Autoinflammatory syndrome, familial, with or without immunodeficiency Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(3)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Aplasia of the vermis Heart defect, tongue hamartoma and polysyndactyly
1 gene
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1 of 1 corroborated by 2+ sources
WDPCP(4)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
Aplasia of the vermis nephronophthisis 1
1 gene
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1 of 1 corroborated by 2+ sources
NPHP1(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
Cognition disorder ornithine carbamoyltransferase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
OTC(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Aplasia of the vermis orofaciodigital syndrome type 14
1 gene
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1 of 1 corroborated by 2+ sources
C2CD3(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
GRHL3-related orofacial clefting Psoriasis vulgaris
1 gene
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1 of 1 corroborated by 2+ sources
GRHL3(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —
Aplasia of the vermis Congenital cerebral hernia
1 gene
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PIBF1(1)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. Cluster 8 →
Non-neoplastic peripheral nervous system disease xeroderma pigmentosum group B
1 gene
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1 of 1 corroborated by 2+ sources
ERCC3(2)
0.018 1.000 3.51e-3 4.52e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.