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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Conduct disorder Dyskinesia, limb and orofacial, infantile-onset
1 gene
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1 of 1 corroborated by 2+ sources
PDE10A(4)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
ADAM9-related retinopathy Retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
ADAM9(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 187 →
AIPL1-related retinopathy Retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
AIPL1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Alpha-n-acetylgalactosaminidase deficiency Pena-shokeir syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NAGA(4)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Aminoglycoside-induced deafness Liver failure
1 gene
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1 of 1 corroborated by 2+ sources
TRMU(4)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Apolipoprotein c-ii deficiency Liver failure
1 gene
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1 of 1 corroborated by 2+ sources
APOC2(6)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Conduct disorder Congenital absence of breast with absent nipple
1 gene
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1 of 1 corroborated by 2+ sources
PTPRF(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Congenital hyperammonemia Vascular disease
1 gene
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1 of 1 corroborated by 2+ sources
CPS1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Conduct disorder Congenital hypogonadotropic hypogonadism
1 gene
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1 of 1 corroborated by 2+ sources
EMX2(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Immune dysregulation-inflammatory bowel disease-arthritis-recurrent infection-lymphopenia syndrome Osteonecrosis of the femoral head
1 gene
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1 of 1 corroborated by 2+ sources
RIPK1(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
immunodeficiency 57 Osteonecrosis of the femoral head
1 gene
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1 of 1 corroborated by 2+ sources
RIPK1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Arrhythmogenic right ventricular cardiomyopathy intrinsic cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
PLN(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 4 →
Hypo-akinesia disorder of prenatal onset Pena-shokeir syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHRNG(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Hypokalemia-hypomagnesemia Vascular disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A3(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Retinopathy RP1-related dominant retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RP1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Retinopathy RP1-related recessive retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RP1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Retinopathy RP2-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RP2(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Pena-shokeir syndrome Schaaf-yang syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MAGEL2(5)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Pena-shokeir syndrome Schindler disease
1 gene
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1 of 1 corroborated by 2+ sources
NAGA(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Conduct disorder Separation anxiety disorder
1 gene
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DRD4(1)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 57 →
Conduct disorder severe intellectual disability-poor language-strabismus-grimacing face-long fingers syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATAD2B(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. Cluster 57 →
Liver failure spinocerebellar ataxia, autosomal recessive 31
1 gene
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1 of 1 corroborated by 2+ sources
ATG7(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Pena-shokeir syndrome succinic semialdehyde dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ALDH5A1(2)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Childhood-onset benign chorea with striatal involvement Conduct disorder
1 gene
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1 of 1 corroborated by 2+ sources
PDE10A(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —
Bladder dysfunction Vascular disease
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA3(3)
0.019 1.000 3.38e-3 4.37e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.