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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Severe combined immunodeficiency severe combined immunodeficiency due to CD70 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD70(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to CORO1A deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CORO1A(5)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to CTPS1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CTPS1(4)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
Severe combined immunodeficiency severe combined immunodeficiency due to DCLRE1C deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DCLRE1C(7)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to DNA-PKcs deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PRKDC(5)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to IKK2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IKBKB(4)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to LAT deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LAT(4)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency severe combined immunodeficiency due to LCK deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LCK(4)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
Severe combined immunodeficiency severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ADA(7)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Severe combined immunodeficiency T-B+ severe combined immunodeficiency due to JAK3 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
JAK3(4)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
Severe combined immunodeficiency t-cell immunodeficiency, congenital alopecia, and nail dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
FOXN1(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 10 →
arthrogryposis multiplex congenita 3, myogenic type Muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SYNE1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
bardet-biedl syndrome 11 Muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TRIM32(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Beta-aminoisobutyric aciduria Ischemic stroke
1 gene
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1 of 1 corroborated by 2+ sources
AGXT2(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Beta-sarcoglycanopathy Muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SGCB(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Agnathia-otocephaly Otosclerosis
1 gene
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PRRX1(1)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Amr syndrome Otosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
AHSG(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Anus neoplasms Ischemic stroke
1 gene
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1 of 1 corroborated by 2+ sources
IFNB1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Apolipoprotein a5 deficiency Ischemic stroke
1 gene
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1 of 1 corroborated by 2+ sources
APOA5(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Hereditary c1 esterase inhibitor deficiency Ischemic stroke
1 gene
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0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
FNIP1-associated syndrome Wolff-parkinson-white syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FNIP1(2)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 4 →
Ghosal hematodiaphyseal dysplasia Ischemic stroke
1 gene
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1 of 1 corroborated by 2+ sources
TBXAS1(7)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Mak-related retinopathy Otosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
MAK(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. Cluster 180 →
Multiple intestinal atresia Severe combined immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
TTC7A(3)
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —
Multisystem disorder Muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.019 1.000 3.31e-3 4.31e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.