Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Glycoprotein storage disease Hypertrophy
1 gene
Show details
1 of 1 corroborated by 2+ sources
GAA(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
GPR161-related medulloblastoma predisposition Medulloblastoma
1 gene
Show details
1 of 1 corroborated by 2+ sources
GPR161(3)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Lynch syndrome thrombocytopenia 10
1 gene
Show details
1 of 1 corroborated by 2+ sources
PTPRJ(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Bone fragility with contractures, arterial rupture, and deafness X-linked osteoporosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
PLS3(4)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Sleep apnea Xia-gibbs syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
AHDC1(3)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Medulloblastoma Riley-day syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
ELP1(5)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Bone fragility with contractures, arterial rupture, and deafness short stature, amelogenesis imperfecta, and skeletal dysplasia with scoliosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
SLC10A7(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Osteoporosis-pseudoglioma syndrome short stature, amelogenesis imperfecta, and skeletal dysplasia with scoliosis
1 gene
Show details
1 of 1 corroborated by 2+ sources
SLC10A7(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Hypertrophy spondylometaphyseal dysplasia, 'corner fracture' type
1 gene
Show details
1 of 1 corroborated by 2+ sources
FN1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Cerebellar ataxia with hearing loss Edema
1 gene
Show details
1 of 1 corroborated by 2+ sources
SLC9A1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Chondromyxoid fibroma Differentiated thyroid carcinoma
1 gene
Show details
1 of 1 corroborated by 2+ sources
GRM1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Chromosome 12p deletion syndrome Differentiated thyroid carcinoma
1 gene
Show details
1 of 1 corroborated by 2+ sources
ERC1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Edema lichtenstein-knorr syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
SLC9A1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
lissencephaly spectrum disorder with complex brainstem malformation Sleep apnea
1 gene
Show details
1 of 1 corroborated by 2+ sources
MACF1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Lymphoblastic leukemia Skeletal dysplasia
2 genes
Show details
2 of 2 corroborated by 2+ sources
TP63(2), CSGALNACT1(4)
0.025 0.087 3.24e-3 4.24e-3 ✓ sig. —
Septo-optic dysplasia Upper extremity fracture
1 gene
Show details
1 of 1 corroborated by 2+ sources
ARID1A(2)
0.067 0.200 3.24e-3 4.24e-3 ✓ sig. —
Acrodysostosis Gallbladder neoplasms
1 gene
Show details
1 of 1 corroborated by 2+ sources
PDE4D(3)
0.037 0.500 3.24e-3 4.24e-3 ✓ sig. —
Conjunctival disease Gallbladder neoplasms
1 gene
Show details
1 of 1 corroborated by 2+ sources
DAPK1(3)
0.037 0.500 3.24e-3 4.24e-3 ✓ sig. Cluster 143 →
Cone-rod synaptic disorder Night blindness, congenital stationary
1 gene
Show details
1 of 1 corroborated by 2+ sources
CABP4(4)
0.037 0.500 3.24e-3 4.24e-3 ✓ sig. —
Polymicrogyria Skraban-deardorff syndrome
1 gene
Show details
WDR62(1)
0.037 0.500 3.24e-3 4.24e-3 ✓ sig. —
Cardiac embolism Retrognathia
1 gene
Show details
1 of 1 corroborated by 2+ sources
PRRX1(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Hereditary hearing loss Sensorineural deafness with dilated cardiomyopathy
1 gene
Show details
1 of 1 corroborated by 2+ sources
EYA4(3)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Hereditary hearing loss Sensorineural hearing loss thrombocytopenia syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
DIAPH1(4)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —
Small vessel stroke spinocerebellar ataxia, autosomal recessive 31
1 gene
Show details
1 of 1 corroborated by 2+ sources
ATG7(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. Cluster 403 →
Promyelocytic leukemia Spontaneous coronary artery dissection
1 gene
Show details
1 of 1 corroborated by 2+ sources
F3(2)
0.020 1.000 3.25e-3 4.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.