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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Diabetic eye disease Thiopurine immunosuppressant-induced pancreatitis
1 gene
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0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Polycystic kidney disease thrombocytopenia 6
1 gene
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1 of 1 corroborated by 2+ sources
SRC(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Polycystic kidney disease polycystic kidney disease 3 with or without polycystic liver disease
1 gene
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1 of 1 corroborated by 2+ sources
GANAB(7)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. Cluster 23 →
Polycystic kidney disease polycystic liver disease 1
1 gene
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1 of 1 corroborated by 2+ sources
PRKCSH(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. Cluster 23 →
Polycystic kidney disease polycystic liver disease 2
1 gene
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1 of 1 corroborated by 2+ sources
SEC63(3)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. Cluster 23 →
Diabetic eye disease lissencephaly spectrum disorder with complex brainstem malformation
1 gene
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1 of 1 corroborated by 2+ sources
MACF1(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. Cluster 73 →
Diabetic eye disease Male infertility motility disorder
1 gene
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1 of 1 corroborated by 2+ sources
CCDC146(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
MKKS-related ciliopathy Polycystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
MKKS(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Polycystic kidney disease renal dysplasia, cystic, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
BICC1(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Genetic predisposition to disease renal hypomagnesemia 4
1 gene
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1 of 1 corroborated by 2+ sources
EGF(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Polycystic kidney disease renal-hepatic-pancreatic dysplasia 2
1 gene
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1 of 1 corroborated by 2+ sources
NEK8(7)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Diabetic eye disease hereditary spherocytosis
1 gene
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1 of 1 corroborated by 2+ sources
ANK1(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic hypotonia Neural tube defect
1 gene
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1 of 1 corroborated by 2+ sources
KMT5B(2)
0.020 1.000 3.12e-3 4.10e-3 ✓ sig. —
Hypomaturation amelogenesis imperfecta Skin hair eye pigmentation variation
1 gene
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1 of 1 corroborated by 2+ sources
SLC24A4(2)
0.071 0.143 3.18e-3 4.17e-3 ✓ sig. —
Differentiated thyroid carcinoma hereditary sensory and autonomic neuropathy type 4
1 gene
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1 of 1 corroborated by 2+ sources
NTRK1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Differentiated thyroid carcinoma Hip dislocation-facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRIM33(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Differentiated thyroid carcinoma Hurthle cell thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
NDUFA13(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. Cluster 130 →
Edema hyper-ige syndrome 6, autosomal dominant, with recurrent infections
1 gene
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1 of 1 corroborated by 2+ sources
STAT6(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
AHDC1-related intellectual disability - obstructive sleep apnea - mild dysmorphism syndrome Sleep apnea
1 gene
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1 of 1 corroborated by 2+ sources
AHDC1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Arboleda-tham syndrome Medulloblastoma
1 gene
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1 of 1 corroborated by 2+ sources
KAT6A(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Differentiated thyroid carcinoma neuroblastoma, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
ALK(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
neurodevelopmental disorder with microcephaly, seizures, and cortical atrophy Ocular hypertension
1 gene
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1 of 1 corroborated by 2+ sources
VARS1(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Hypertrophy neutral lipid storage myopathy
1 gene
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1 of 1 corroborated by 2+ sources
PNPLA2(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Congenital posterior urethral valves Sleep apnea
1 gene
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1 of 1 corroborated by 2+ sources
BNC2(2)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —
Congenital tufting enteropathy Lynch syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EPCAM(8)
0.020 1.000 3.18e-3 4.17e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.