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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Acrocapitofemoral dysplasia Gastrointestinal stromal tumor
1 gene
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1 of 1 corroborated by 2+ sources
IHH(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
acute myeloid leukemia Head and neck neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
CEBPA(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Alveolar capillary dysplasia Gastrointestinal stromal tumor
1 gene
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1 of 1 corroborated by 2+ sources
FOXF1(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Hypogonadotropic hypogonadism POLR3B-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLR3B(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
pseudohyperaldosteronism type 2 Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
NR3C2(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Pseudohypoaldosteronism Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
NR3C2(4)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Gastrointestinal stromal tumor RAB23-related Carpenter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RAB23(2)
0.021 1.000 3.05e-3 4.03e-3 ✓ sig. —
Hoyeraal hreidarsson syndrome Paralytic strabismus
1 gene
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1 of 1 corroborated by 2+ sources
PARN(3)
0.071 0.167 3.11e-3 4.10e-3 ✓ sig. —
Metachromatic leukodystrophy Pelizaeus-merzbacher disease
1 gene
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1 of 1 corroborated by 2+ sources
MAL(2)
0.071 0.167 3.11e-3 4.10e-3 ✓ sig. —
Cervical intraepithelial neoplasia Spermatocele
1 gene
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PAX8(1)
0.071 0.167 3.11e-3 4.10e-3 ✓ sig. —
Congenital thyroid atrophy Spermatocele
1 gene
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1 of 1 corroborated by 2+ sources
PAX8(2)
0.071 0.167 3.11e-3 4.10e-3 ✓ sig. Cluster 88 →
Congenital hypothyroidism without goiter Spermatocele
1 gene
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1 of 1 corroborated by 2+ sources
PAX8(2)
0.071 0.167 3.11e-3 4.10e-3 ✓ sig. Cluster 88 →
Ovarian mucinous adenocarcinoma Spermatocele
1 gene
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PAX8(1)
0.071 0.167 3.11e-3 4.10e-3 ✓ sig. —
Carotid atherosclerosis hereditary nonpolyposis colon cancer
1 gene
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1 of 1 corroborated by 2+ sources
SMARCA4(2)
0.071 0.167 3.11e-3 4.10e-3 ✓ sig. Cluster 120 →
Duane retraction syndrome Parathyroid disease
1 gene
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1 of 1 corroborated by 2+ sources
MAFB(7)
0.063 0.250 3.11e-3 4.10e-3 ✓ sig. —
Knobloch syndrome Megaloblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A1(4)
0.063 0.250 3.11e-3 4.10e-3 ✓ sig. —
Congenital chloride diarrhea Intestinal obstruction
1 gene
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1 of 1 corroborated by 2+ sources
SLC26A3(3)
0.063 0.250 3.11e-3 4.10e-3 ✓ sig. Cluster 172 →
Endocrine neoplasms Eye neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
KDR(2)
0.063 0.250 3.11e-3 4.10e-3 ✓ sig. —
Mulibrey nanism Stomach disease
1 gene
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1 of 1 corroborated by 2+ sources
TRPM3(2)
0.063 0.250 3.11e-3 4.10e-3 ✓ sig. Cluster 109 →
Autoimmune musculoskeletal system disorder muscular dystrophy, limb-girdle, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
TNPO3(2)
0.063 0.250 3.11e-3 4.10e-3 ✓ sig. —
muscular dystrophy, limb-girdle, autosomal dominant Myofibrillar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
DNAJB6(2)
0.063 0.250 3.11e-3 4.10e-3 ✓ sig. —
Trichohepatoenteric syndrome Urinary system neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
SKIC3(7)
0.063 0.250 3.11e-3 4.10e-3 ✓ sig. —
Paralysis Wallerian degeneration
1 gene
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SIRT1(1)
0.063 0.250 3.11e-3 4.10e-3 ✓ sig. —
Cachexia Hyperemesis gravidarum
1 gene
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1 of 1 corroborated by 2+ sources
GDF15(3)
0.063 0.250 3.11e-3 4.10e-3 ✓ sig. —
Chromosome 2q37 deletion syndrome Diabetes complications
1 gene
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1 of 1 corroborated by 2+ sources
HDAC4(4)
0.063 0.250 3.11e-3 4.10e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.