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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Bronchopulmonary dysplasia familial isolated arrhythmogenic right ventricular dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
DSC2(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Bronchopulmonary dysplasia Genetic generalized epilepsy
1 gene
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TNK2(1)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. Cluster 119 →
Combined deficiency of sialidase and beta galactosidase Non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
CTSA(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Compton-north congenital myopathy Congenital myopathy
1 gene
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1 of 1 corroborated by 2+ sources
CNTN1(3)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital factor x deficiency Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
F10(4)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
congenital heart defects, multiple types, 7 Non-immune hydrops fetalis
1 gene
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1 of 1 corroborated by 2+ sources
FLT4(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital hypoplasia of penis Pulmonary arterial hypertension
1 gene
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PHF6(1)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital lethal myopathy Congenital myopathy
1 gene
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1 of 1 corroborated by 2+ sources
CNTN1(3)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital malrotation of intestine Non-immune hydrops fetalis
1 gene
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GALNT14(1)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. Cluster 42 →
Congenital methemoglobinemia Congenital myopathy
1 gene
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CYB5R3(1)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Thrombomodulin-related bleeding disorder Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
THBD(5)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. Cluster 55 →
platelet-type bleeding disorder 8 Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
P2RY12(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
platelet-type von Willebrand disease Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
GP1BA(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
protein S deficiency Thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
PROS1(2)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Pulmonary arterial hypertension pulmonary veno-occlusive disease and/or pulmonary capillary haemangiomatosis
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK4(4)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Bailey-Bloch congenital myopathy Congenital myopathy
1 gene
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1 of 1 corroborated by 2+ sources
STAC3(3)
0.022 1.000 2.92e-3 3.88e-3 ✓ sig. —
Congenital impairment of spermatozoa motility Male infertility teratozoospermia
1 gene
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CFAP251(1)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. Cluster 31 →
Microscopic colitis Nasal disorder
1 gene
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CLEC16A(1)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. —
Dysautonomia Systemic mastocytosis
1 gene
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1 of 1 corroborated by 2+ sources
TPSAB1(3)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. —
Dyschromatopsia Systemic mastocytosis
1 gene
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1 of 1 corroborated by 2+ sources
EYS(2)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. —
Bullous pemphigoid Syndactyly of the toes
1 gene
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1 of 1 corroborated by 2+ sources
DHCR7(2)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. —
immunodeficiency 104 Nasal disorder
1 gene
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1 of 1 corroborated by 2+ sources
IL7R(2)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. Cluster 137 →
Intellectual developmental disorder dysmorphic microcephaly Skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COPB1(2)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. —
Corneal endothelial dystrophy Fuchs endothelial dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A11(5)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. Cluster 75 →
Cobblestone lissencephaly Fuchs endothelial dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
LAMB1(6)
0.040 0.500 2.99e-3 3.95e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.