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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Neurodegenerative disorder Striatal neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PDE8B(5)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
T-cell immunodeficiency Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
FOXI3(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
ectodermal dysplasia WNT10A related Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
WNT10A(8)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Neurodegenerative disorder Pantothenate kinase-associated neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PANK2(4)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Periodic paralysis with transient compartment-like syndrome Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1S(3)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Heart valve disease Pyoderma gangrenosum
1 gene
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1 of 1 corroborated by 2+ sources
PTPN6(3)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Neurodegenerative disorder Regressive neurodevelopmental disorder dystonia seizures
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BPL(3)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
neurodegenerative disease Neurodegenerative disorder
1 gene
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1 of 1 corroborated by 2+ sources
IRF2BPL(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
oligodontia-cancer predisposition syndrome Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
AXIN2(3)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. Cluster 63 →
Carotid atherosclerosis Mandibulofacial dysostosis
1 gene
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1 of 1 corroborated by 2+ sources
EDNRA(6)
0.077 0.167 2.72e-3 3.66e-3 ✓ sig. —
Cafe-au-lait spots Corticobasal degeneration
1 gene
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1 of 1 corroborated by 2+ sources
SOS1(2)
0.077 0.167 2.72e-3 3.66e-3 ✓ sig. —
Eyelid disease Peritonitis
1 gene
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1 of 1 corroborated by 2+ sources
IFNG(2)
0.077 0.167 2.72e-3 3.66e-3 ✓ sig. —
Peritonitis Tuberous sclerosis complex
1 gene
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1 of 1 corroborated by 2+ sources
IFNG(4)
0.077 0.167 2.72e-3 3.66e-3 ✓ sig. —
Cold paroxysmal hemoglobinuria Peritonitis
1 gene
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1 of 1 corroborated by 2+ sources
C5(2)
0.077 0.167 2.72e-3 3.66e-3 ✓ sig. —
Congenital hearing disorder hearing loss, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
SLC22A4(2)
0.077 0.167 2.72e-3 3.66e-3 ✓ sig. —
Absence epilepsy Synovial disorder
1 gene
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1 of 1 corroborated by 2+ sources
GABRB3(2)
0.077 0.167 2.72e-3 3.66e-3 ✓ sig. Cluster 47 →
Cold paroxysmal hemoglobinuria Terminal complement component deficiency
1 gene
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C5(1)
0.077 0.167 2.72e-3 3.66e-3 ✓ sig. —
Hemoglobinuria paroxysmal Terminal complement component deficiency
1 gene
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C5(1)
0.077 0.167 2.72e-3 3.66e-3 ✓ sig. —
Bile acid malabsorption Intestinal disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC10A2(5)
0.059 0.333 2.73e-3 3.66e-3 ✓ sig. —
Bicuspid aortic valve Throat disease
1 gene
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1 of 1 corroborated by 2+ sources
GATA5(3)
0.059 0.333 2.73e-3 3.66e-3 ✓ sig. —
Avascular necrosis of bone Torg-winchester syndrome
1 gene
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MMP2(1)
0.059 0.333 2.73e-3 3.66e-3 ✓ sig. —
Metabolic bone disorder Torg-winchester syndrome
1 gene
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MMP2(1)
0.059 0.333 2.73e-3 3.66e-3 ✓ sig. —
Partington syndrome X-linked syndromic complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
AP1S2(2)
0.059 0.333 2.73e-3 3.66e-3 ✓ sig. —
Cold-induced sweating syndrome Esophageal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
CRLF1(5)
0.059 0.333 2.73e-3 3.66e-3 ✓ sig. —
Congenital bone marrow failure syndrome Pancytopenia
1 gene
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1 of 1 corroborated by 2+ sources
ERCC6L2(5)
0.059 0.333 2.73e-3 3.66e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.