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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Nephronophthisis nephronophthisis 7
1 gene
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1 of 1 corroborated by 2+ sources
GLIS2(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →
nephrotic syndrome 14 Uveal melanoma
1 gene
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1 of 1 corroborated by 2+ sources
SGPL1(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 162 →
Interstitial cystitis neurodevelopmental disorder with microcephaly, seizures, and cortical atrophy
1 gene
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1 of 1 corroborated by 2+ sources
VARS1(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 1 →
Myasthenic syndrome neuronopathy, distal hereditary motor, type 7A
1 gene
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1 of 1 corroborated by 2+ sources
SLC5A7(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 34 →
CEP164-related ciliopathy Nephronophthisis
1 gene
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1 of 1 corroborated by 2+ sources
CEP164(5)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. Cluster 8 →
Cervicitis Kidney neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
IL32(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Charcot-Marie-tooth disease, axonal, type 2DD Neuromuscular disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A1(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Cleft lip/palate with abnormal thumbs and microcephaly Kidney neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ESCO2(2)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Nephronophthisis renal-hepatic-pancreatic dysplasia 2
1 gene
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1 of 1 corroborated by 2+ sources
NEK8(6)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Kidney neoplasms Roberts syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ESCO2(7)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Degenerative disorder Striatal neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PDE8B(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Myasthenic syndrome Systemic primary carnitine deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC22A5(4)
0.024 1.000 2.60e-3 3.51e-3 ✓ sig. —
Congenital disorder of glycosylation Intellectual developmental disorder, x-linked
4 genes
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4 of 4 corroborated by 2+ sources
ALG13(2), MAGT1(4), ATP6AP1(3), ATP6AP2(5)
0.022 0.045 2.58e-3 3.51e-3 ✓ sig. —
Heart valve disease lissencephaly 10
1 gene
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1 of 1 corroborated by 2+ sources
CEP85L(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Tooth agenesis tooth agenesis, selective, 3
1 gene
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1 of 1 corroborated by 2+ sources
PAX9(6)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. Cluster 63 →
Tooth agenesis tooth agenesis, selective, 9
1 gene
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1 of 1 corroborated by 2+ sources
GREM2(5)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. Cluster 63 →
Heart valve disease Vitamin k deficiency
1 gene
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1 of 1 corroborated by 2+ sources
BGLAP(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. Cluster 370 →
Arteriosclerosis Corneal injury
1 gene
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1 of 1 corroborated by 2+ sources
ALDH3A1(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. Cluster 141 →
craniofacial dysplasia - osteopenia syndrome Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
IRX5(4)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
craniosynostosis 2 Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
MSX2(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Bullous pyoderma gangrenosum Heart valve disease
1 gene
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1 of 1 corroborated by 2+ sources
PTPN6(3)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
amyotrophic lateral sclerosis type 10 Neurodegenerative disorder
1 gene
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1 of 1 corroborated by 2+ sources
TARDBP(3)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Anhidrotic ectodermal dysplasia Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
EDA(6)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
aortic valve disease 3 Thoracic aortic aneurysm and aortic dissection
1 gene
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1 of 1 corroborated by 2+ sources
ROBO4(2)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —
Schopf-schulz-passarge syndrome Tooth agenesis
1 gene
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1 of 1 corroborated by 2+ sources
WNT10A(7)
0.024 1.000 2.66e-3 3.60e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.