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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Brunet-wagner neurodevelopmental syndrome Lymphocytic b-cell leukemia
1 gene
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1 of 1 corroborated by 2+ sources
RBL2(5)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Brunner syndrome Panic disorder
1 gene
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1 of 1 corroborated by 2+ sources
MAOA(5)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Bruton type agammaglobulinemia Growth hormone deficiency
1 gene
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1 of 1 corroborated by 2+ sources
BTK(4)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Bruton type agammaglobulinemia Pituitary short stature
1 gene
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1 of 1 corroborated by 2+ sources
BTK(4)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Cardiac anomalies - developmental delay - facial dysmorphism syndrome Strabismus
1 gene
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1 of 1 corroborated by 2+ sources
MED13L(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Lymphocytic b-cell leukemia Sebaceous gland neoplasms
1 gene
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LEF1(1)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Growth hormone deficiency TCF12-related craniosynostosis
1 gene
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1 of 1 corroborated by 2+ sources
TCF12(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Pituitary short stature TCF12-related craniosynostosis
1 gene
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1 of 1 corroborated by 2+ sources
TCF12(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Congenital nephrotic syndrome Genetic steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NPHS1(4)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 30 →
Congenital nephrotic syndrome Hereditary steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NPHS1(3)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 30 →
Cryptogenic multifocal ulcerous stenosing enteritis Schizoaffective disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G4A(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 265 →
Cytosolic phospholipase-a2 alpha deficiency associated bleeding disorder Schizoaffective disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G4A(5)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. Cluster 265 →
Deaf blind hypopigmentation syndrome Growth hormone deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(2)
0.029 1.000 2.21e-3 3.11e-3 ✓ sig. —
Coronary aneurysm Schizoaffective disorder
2 genes
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CSMD1(1), NRXN3(1)
0.031 0.063 2.25e-3 3.17e-3 ✓ sig. —
complex hereditary spastic paraplegia Paraplegia
1 gene
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1 of 1 corroborated by 2+ sources
VPS37A(2)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Graft versus host disease Pseudoxanthoma elasticum
1 gene
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1 of 1 corroborated by 2+ sources
XYLT1(2)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. Cluster 128 →
Autosomal recessive ataxia Emery-dreifuss muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SYNE1(7)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Osteolysis Paget disease
1 gene
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1 of 1 corroborated by 2+ sources
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Bronchiolitis obliterans Peritonitis
1 gene
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1 of 1 corroborated by 2+ sources
IFNG(2)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Glucose-6-phosphate dehydrogenase deficiency Peritonitis
1 gene
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1 of 1 corroborated by 2+ sources
IFNG(2)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. Cluster 87 →
Congenital deformity of clavicle Neuropathy, congenital hypomyelinating
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP1(3)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Bronchopneumonia Congenital cardiovascular anomaly
1 gene
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SERTM1(1)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Cerebellar atrophy with seizures and variable developmental delay Gingival diseases
1 gene
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1 of 1 corroborated by 2+ sources
KCNMA1(4)
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
Benign hereditary chorea Cerebellar atrophy with seizures and variable developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
0.083 0.200 2.27e-3 3.19e-3 ✓ sig. —
CBL-related disorder Growth disorder
1 gene
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1 of 1 corroborated by 2+ sources
CBL(2)
0.028 1.000 2.27e-3 3.19e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.