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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
familial acute necrotizing encephalopathy Mitochondrial dna depletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RANBP2(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
fanconi anemia complementation group i Mitochondrial dna depletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FANCI(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 97 →
Focal segmental glomerulosclerosis focal segmental glomerulosclerosis 3, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
CD2AP(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Focal segmental glomerulosclerosis focal segmental glomerulosclerosis and neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRIM8(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 30 →
Holoprosencephaly Patterson stevenson fontaine syndrome
1 gene
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LMBR1(1)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Heart valve prolapse Pyoderma gangrenosum
1 gene
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1 of 1 corroborated by 2+ sources
PTPN6(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Developmental delay with dysmorphic facies and dental anomalies Duchenne muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SATB1(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Congenital myasthenic syndrome DPAGT1-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
DPAGT1(6)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Benign congenital myopathy Duchenne muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
DMD(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 213 →
Duchenne muscular dystrophy Dystrophinopathy
1 gene
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1 of 1 corroborated by 2+ sources
DMD(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 213 →
Duchenne muscular dystrophy progressive muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
DMD(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 213 →
Duchenne muscular dystrophy Retrograde amnesia
1 gene
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1 of 1 corroborated by 2+ sources
PREP(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
ectodermal dysplasia 10b, hypohidrotic/hair/tooth type, autosomal recessive Mitochondrial dna depletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EDAR(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Congenital myasthenic syndrome myopathy caused by variation in GMPPB
1 gene
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1 of 1 corroborated by 2+ sources
GMPPB(6)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Macrogyria myopathy caused by variation in POMT2
1 gene
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1 of 1 corroborated by 2+ sources
POMT2(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Focal segmental glomerulosclerosis nail-patella syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LMX1B(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Duchenne muscular dystrophy nephrotic syndrome, type 12
1 gene
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1 of 1 corroborated by 2+ sources
NUP93(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Holoprosencephaly neurodevelopmental disorder with nonspecific brain abnormalities and with or without seizures
1 gene
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1 of 1 corroborated by 2+ sources
DLL1(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 96 →
Congenital myasthenic syndrome neuronopathy, distal hereditary motor, type 7A
1 gene
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1 of 1 corroborated by 2+ sources
SLC5A7(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 34 →
Neuropathy, congenital hypomyelinating Retinitis punctata albescens
1 gene
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1 of 1 corroborated by 2+ sources
RHO(2)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —
Laryngeal neoplasms Respiratory system neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
ADH1B(2)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —
Adams-oliver syndrome Aplasia cutis congenita
1 gene
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1 of 1 corroborated by 2+ sources
DLL4(4)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —
Congenital bile acid synthesis defect Oculopharyngodistal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
ABCD3(7)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —
Cerebellar atrophy with seizures and variable developmental delay complex neurodevelopmental disorder with motor features
1 gene
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1 of 1 corroborated by 2+ sources
EMC1(6)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. Cluster 58 →
Paralytic strabismus Telomere syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PARN(2)
0.091 0.200 1.95e-3 2.83e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.