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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Chromosome xq27.3-q28 duplication syndrome Gonadal dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
FMR1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
CNGB3-related retinopathy Stargardt disease
1 gene
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1 of 1 corroborated by 2+ sources
CNGB3(3)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Idiopathic steroid-resistant nephrotic syndrome Ventriculomegaly with cystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(4)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Hereditary parkinson disease Vesiculobullous skin disease
1 gene
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1 of 1 corroborated by 2+ sources
PRKN(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 256 →
Internet addiction disorder X-linked creatine transporter deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A8(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Bilateral vestibulopathy Hereditary parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
RFC1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Brachydactyly-short stature-retinits pigmentosa syndrome Diverticulitis
1 gene
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1 of 1 corroborated by 2+ sources
CWC27(3)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 373 →
Cardiac anomalies-short stature-joint hypermobility-facial dysmorphism syndrome due to tab2 mutation Diverticulitis
1 gene
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1 of 1 corroborated by 2+ sources
TAB2(3)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Erythrokeratodermia with ataxia Stargardt disease
1 gene
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1 of 1 corroborated by 2+ sources
ELOVL4(6)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Culler-jones syndrome Exostoses
1 gene
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1 of 1 corroborated by 2+ sources
GLI2(3)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Exostoses Postaxial polydactyly–anterior pituitary anomalies–facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLI2(4)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Exostoses Vesiculobullous skin disease
1 gene
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PRKN(1)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Exostoses Seizures, scoliosis, and macrocephaly/microcephaly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EXT2(7)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 93 →
Exostoses exostoses, multiple, type 2
1 gene
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1 of 1 corroborated by 2+ sources
EXT2(5)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 93 →
Exostoses exostoses, multiple, type 1
1 gene
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1 of 1 corroborated by 2+ sources
EXT1(6)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
focal segmental glomerulosclerosis 3, susceptibility to Idiopathic steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD2AP(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
focal segmental glomerulosclerosis 9 Idiopathic steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
fragile x syndrome Gonadal dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
FMR1(3)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
fraser syndrome 3 Lymphoid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
GRIP1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Gaucher disease-ophthalmoplegia-cardiovascular calcification syndrome Hereditary parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
GBA1(5)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Genetic lipodystrophy Leber hereditary optic neuropathy
1 gene
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EPHX1(1)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Genetic renal tubular disease Lymphoid leukemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A3(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Growth restriction, hypoplastic kidneys, alopecia, and distinctive facies Hypertriglyceridemia
1 gene
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1 of 1 corroborated by 2+ sources
ZPR1(4)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 254 →
cone-rod dystrophy 2 Stargardt disease
1 gene
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1 of 1 corroborated by 2+ sources
CRX(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 7 →
Congenital alveolar capillary dysplasia Mastocytosis
1 gene
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1 of 1 corroborated by 2+ sources
FOXF1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.