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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Charcot-Marie-tooth disease, axonal, type 2DD Hyperaldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A1(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Chromosome 1p32-p31 deletion syndrome Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
NFIA(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Chromosome 1p32-p31 deletion syndrome Uterine polyp
1 gene
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1 of 1 corroborated by 2+ sources
NFIA(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Cleft palate cardiac defects impaired intellectual development Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
MEIS2(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Cleft palate congenital heart defect intellectual disability syndrome due to 15q14 microdeletion Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
MEIS2(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Cleft palate proliferative retinopathy developmental delay Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
LRRC32(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Cleft palate with ankyloglossia Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 282 →
Cleft palate x-linked Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 282 →
Deficiency anemia Partial deficiency of methylmalonyl-coenzyme a mutase
1 gene
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1 of 1 corroborated by 2+ sources
MMUT(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Hyperaldosteronism Peters plus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
B3GLCT(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Hemorrhage platelet-type bleeding disorder 8
1 gene
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1 of 1 corroborated by 2+ sources
P2RY12(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Polyneuropathy Primary immunodeficiency with defective natural killer cell cytotoxicity
1 gene
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1 of 1 corroborated by 2+ sources
FCGR3A(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
primordial dwarfism-immunodeficiency-lipodystrophy syndrome Uterine polyp
1 gene
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1 of 1 corroborated by 2+ sources
PRIM1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Progressive myoclonic epilepsy Progressive myoclonic epilepsy with renal failure
1 gene
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1 of 1 corroborated by 2+ sources
SEMA6B(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 329 →
ARHGAP29-related non-syndromic orofacial cleft Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
asphyxiating thoracic dystrophy 2 Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IFT80(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Autoimmune thrombocytopenic purpura fraser syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
GRIP1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Autoimmune thrombocytopenic purpura Cerebellar hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
VLDLR(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Autoimmune thrombocytopenic purpura Autoinflammatory syndrome with immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 321 →
Autoimmune thrombocytopenic purpura Autoinflammatory syndrome, familial, with or without immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 321 →
Autoimmune thrombocytopenic purpura Autoimmunity-autoinflammation-immunodeficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 321 →
Beemer-langer syndrome Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IFT80(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Hereditary neuropathy with liability to pressure palsies Myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
PMP22(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Conduction disorder of the heart hereditary spherocytosis
1 gene
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1 of 1 corroborated by 2+ sources
ANK1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Developmental delay with dysmorphic facies and dental anomalies Hyperaldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
SATB1(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.