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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Neutrophilic leukemia Severe congenital neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
CSF3R(6)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 209 →
Oculocerebrofacial syndrome Polymyositis
1 gene
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1 of 1 corroborated by 2+ sources
UBE3B(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Centronuclear myopathy OPA1-related optic atrophy with or without extraocular features
1 gene
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1 of 1 corroborated by 2+ sources
OPA1(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Cerebral arteriovenous malformations Osteopoikilosis
1 gene
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LEMD3(1)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 175 →
Centronuclear myopathy immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXP3(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Hydranencephaly immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXP3(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Erythematosquamous dermatosis Intellectual developmental disorder dysmorphic macrocephaly
1 gene
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1 of 1 corroborated by 2+ sources
ZBTB7A(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
IRIDA syndrome Iron metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
TMPRSS6(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Hydranencephaly joubert syndrome 14
1 gene
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1 of 1 corroborated by 2+ sources
TMEM237(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 110 →
Hydranencephaly joubert syndrome 36
1 gene
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1 of 1 corroborated by 2+ sources
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 110 →
Congenital muscular dystrophy LAMA2-related muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
LAMA2(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
leber congenital amaurosis 15 Syndactyly
1 gene
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1 of 1 corroborated by 2+ sources
TULP1(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 352 →
Hemophilia a carriers Venous thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
F8(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Hyaluronoglucosaminidase deficiency Mucopolysaccharidosis
1 gene
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1 of 1 corroborated by 2+ sources
HYAL1(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
hypoinsulinemic hypoglycemia and body hemihypertrophy Nasopharyngeal carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
AKT2(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Cerebellar vermis atrophy Cerebral arteriovenous malformations
1 gene
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SYN3(1)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 175 →
Cernunnos-XLF deficiency Syndactyly
1 gene
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1 of 1 corroborated by 2+ sources
NHEJ1(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 352 →
Chylothorax Heterotaxy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PKD1L1(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 46 →
Coasy protein-associated neurodegeneration Mucopolysaccharidosis
1 gene
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1 of 1 corroborated by 2+ sources
COASY(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Coenzyme a synthase protein associated neurodegeneration Mucopolysaccharidosis
1 gene
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COASY(1)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Disabling pansclerotic morphea of childhood Polymyositis
1 gene
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1 of 1 corroborated by 2+ sources
STAT4(3)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Centronuclear myopathy Dominant hereditary optic atrophy
1 gene
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OPA1(1)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Dursun syndrome Severe congenital neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
G6PC3(6)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Dysbiosis Keratitis
1 gene
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1 of 1 corroborated by 2+ sources
TLR4(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Congenital muscular dystrophy Dysferlinopathy
1 gene
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1 of 1 corroborated by 2+ sources
DYSF(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.