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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
leukemia, acute myeloid, susceptibility to Splenomegaly
1 gene
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1 of 1 corroborated by 2+ sources
FLT3(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
leukodystrophy, adult-onset, autosomal dominant, without amyloid angiopathy Oral submucous fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
CST3(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Hypertensive nephropathy macrothrombocytopenia and granulocyte inclusions with or without nephritis or sensorineural hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
MYH9(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
MECOM-associated syndrome Splenomegaly
1 gene
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1 of 1 corroborated by 2+ sources
MECOM(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
nephronophthisis 16 Situs inversus
1 gene
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1 of 1 corroborated by 2+ sources
ANKS6(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
nizon-isidor syndrome Platelet-type bleeding disorder
1 gene
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1 of 1 corroborated by 2+ sources
MED12L(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 33 →
NOTCH1-related AOS spectrum disorder Splenomegaly
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH1(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Platelet-type bleeding disorder Thrombasthenia-thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
GFI1B(6)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Platelet-type bleeding disorder Thrombocytopenia with platelet secretion defect
1 gene
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1 of 1 corroborated by 2+ sources
SLFN14(7)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Platelet-type bleeding disorder TPM4-related platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
TPM4(5)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 33 →
Dandy-walker syndrome Turricephaly
1 gene
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1 of 1 corroborated by 2+ sources
ZIC1(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Visual disorder Vitamin e deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TTPA(4)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Antiphospholipid syndrome X-linked hyper-igm syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CD40LG(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Dandy-walker syndrome X-linked opitz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MID1(4)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Congenital diaphragmatic hernia X-linked osteoporosis
1 gene
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1 of 1 corroborated by 2+ sources
PLS3(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
12p12.1 microdeletion syndrome Hoarding disorder
1 gene
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1 of 1 corroborated by 2+ sources
SOX5(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Acrocapitofemoral dysplasia Retinopathy of prematurity
1 gene
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1 of 1 corroborated by 2+ sources
IHH(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
acute myeloid leukemia Hoarding disorder
1 gene
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1 of 1 corroborated by 2+ sources
CEBPA(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. Cluster 278 →
Acys amyloidosis Oral submucous fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
CST3(4)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Adult polyglucosan body disease Cutis laxa
1 gene
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1 of 1 corroborated by 2+ sources
GBE1(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
AIPL1-related retinopathy Fraser syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AIPL1(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Alkuraya-kucinskas syndrome Dandy-walker syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BLTP1(3)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
anterior segment dysgenesis 7 Visual disorder
1 gene
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1 of 1 corroborated by 2+ sources
PXDN(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
aortic valve disease 3 Congenital diaphragmatic hernia
1 gene
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1 of 1 corroborated by 2+ sources
ROBO4(2)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —
Dandy-walker syndrome Right aortic arch
1 gene
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BLTP1(1)
0.048 1.000 1.30e-3 2.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.