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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Mountain sickness Tricuspid valve disease
1 gene
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AEBP2(1)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Craniodiaphyseal dysplasia Saldino-mainzer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IFT140(3)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Sjogren-larsson syndrome Tongue neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
KRT14(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 269 →
Omenn syndrome Partial adenosine deaminase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ADA(3)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Acetyl-coa acetyltransferase deficiency Carbohydrate metabolism disease
1 gene
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1 of 1 corroborated by 2+ sources
ACAT1(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Adrenoleukodystrophy Eye disorder
1 gene
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1 of 1 corroborated by 2+ sources
SCD(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Amed syndrome Head and neck cancer
1 gene
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1 of 1 corroborated by 2+ sources
ALDH2(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Apraxia Ophthalmoplegia
1 gene
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NPC1(1)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 380 →
immunodeficiency 104 Omenn syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IL7R(4)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Iron deficiency anemia Iron-refractory iron deficiency anemia
1 gene
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1 of 1 corroborated by 2+ sources
TMPRSS6(4)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Combined immunodeficiency, x-linked Omenn syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IL2RG(5)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Congenital dyserythropoietic anemia Familial mediterranean fever
1 gene
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ABCB1(1)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 57 →
Congenital mesoblastic nephroma Myelomonocytic leukemia
1 gene
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ETV6(1)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
autosomal dominant medullary cystic kidney disease with or without hyperuricemia Hypertensive heart disease
1 gene
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1 of 1 corroborated by 2+ sources
UMOD(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Bartsocas-papas syndrome Congenital skin anomaly
1 gene
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1 of 1 corroborated by 2+ sources
CHUK(5)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Bartsocas-papas syndrome Skin abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
CHUK(6)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Bilateral generalized polymicrogyria Laryngeal carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
RTTN(3)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Contracture Soft tissue neoplasms
1 gene
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EPHB1(1)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Contracture Dermatosparaxis ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 52 →
Apraxia Developmental delay with variable intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
JARID2(5)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 380 →
Diaphragm disease Leiomyoma
1 gene
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1 of 1 corroborated by 2+ sources
WNT5B(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. Cluster 49 →
Dubowitz syndrome Omenn syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LIG4(3)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Angelman syndrome Duplication 15q11-q13 syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UBE3A(7)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Cavitary optic disk anomaly Delirium
1 gene
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1 of 1 corroborated by 2+ sources
APOE(2)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —
Cebalid syndrome Facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MN1(6)
0.083 0.500 1.30e-3 2.06e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.