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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
inherited glutathione synthetase deficiency Mouth disease
1 gene
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1 of 1 corroborated by 2+ sources
GSS(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
IRIDA syndrome Polycythemia
1 gene
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1 of 1 corroborated by 2+ sources
TMPRSS6(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
isovaleric acidemia Secondary malignant neoplasm
1 gene
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1 of 1 corroborated by 2+ sources
IVD(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 235 →
Aortic disease juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMAD4(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Aortic disease Myhre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMAD4(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy neuropathy, hereditary sensory and autonomic, type 1A
1 gene
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1 of 1 corroborated by 2+ sources
SPTLC1(7)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 169 →
Hereditary sensory and autonomic neuropathy neuropathy, hereditary sensory and autonomic, type 1C
1 gene
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1 of 1 corroborated by 2+ sources
SPTLC2(7)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 169 →
Hereditary sensory and autonomic neuropathy neuropathy, hereditary sensory and autonomic, type 2A
1 gene
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1 of 1 corroborated by 2+ sources
WNK1(7)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 169 →
Hereditary sensory and autonomic neuropathy neuropathy, hereditary sensory, type 1D
1 gene
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1 of 1 corroborated by 2+ sources
ATL1(7)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hereditary sensory and autonomic neuropathy neuropathy, hereditary sensory, type 1F
1 gene
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1 of 1 corroborated by 2+ sources
ATL3(7)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 169 →
Blepharoptosis OPA1-related optic atrophy with or without extraocular features
1 gene
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1 of 1 corroborated by 2+ sources
OPA1(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Hyperparathyroidism Osteolysis, hereditary, of carpal bones with or without nephropathy
1 gene
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1 of 1 corroborated by 2+ sources
MAFB(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Amyloidosis Congenital plasminogen activator inhibitor deficiency type 1
1 gene
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1 of 1 corroborated by 2+ sources
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Cortical dysplasia-focal epilepsy syndrome Specific language disorder
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 179 →
Deafness and myopia Marshall syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLITRK6(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
A4GALT-congenital disorder of glycosylation Burkitt lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
A4GALT(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Alstrom syndrome Down syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALMS1(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Alys amyloidosis Amyloidosis
1 gene
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1 of 1 corroborated by 2+ sources
LYZ(4)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 228 →
amyotrophic lateral sclerosis type 22 Blepharoptosis
1 gene
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1 of 1 corroborated by 2+ sources
TUBA4A(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Antecubital pterygium syndrome Neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
PSD3(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
lethal occipital encephalocele-skeletal dysplasia syndrome Mouth disease
1 gene
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1 of 1 corroborated by 2+ sources
CYP26B1(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma leukemia, acute lymphoblastic, susceptibility to, 3
1 gene
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1 of 1 corroborated by 2+ sources
PAX5(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
B-lymphoblastic leukemia/lymphoma leukemia, acute myeloid, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
FLT3(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. Cluster 3 →
Lipidoses Palmoplantar keratoderma and congenital alopecia
1 gene
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1 of 1 corroborated by 2+ sources
LSS(3)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —
Cataract-alopecia-sclerodactyly syndrome Lipidoses
1 gene
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1 of 1 corroborated by 2+ sources
LSS(2)
0.050 1.000 1.23e-3 1.99e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.