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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Graves ophthalmopathy platelet-type bleeding disorder 17
1 gene
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1 of 1 corroborated by 2+ sources
GFI1B(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Graves ophthalmopathy platelet-type bleeding disorder 18
1 gene
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1 of 1 corroborated by 2+ sources
RASGRP2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Junctional epidermolysis bullosa PLEC-related muscular dystrophy-epidermolysis bullosa simplex spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLEC(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Lipodystrophy PLIN1-related familial partial lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
PLIN1(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 71 →
Clinodactyly poirier-bienvenu neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CSNK2B(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Lipodystrophy POLD1-related polyposis and colorectal cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
POLD1(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Giant cell arteritis Primary immunodeficiency with defective natural killer cell cytotoxicity
1 gene
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1 of 1 corroborated by 2+ sources
FCGR3A(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 1 →
primordial dwarfism-immunodeficiency-lipodystrophy syndrome Seckel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRIM1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 101 →
Clinodactyly primrose syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZBTB20(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Clinodactyly progressive muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
DMD(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Potassium deficiency Progressive myoclonic epilepsy with intracellular inclusions
1 gene
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1 of 1 corroborated by 2+ sources
PRDM8(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
progressive pseudorheumatoid arthropathy of childhood Spondyloepiphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
CCN6(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Childhood-onset benign chorea with striatal involvement Tooth disease
1 gene
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1 of 1 corroborated by 2+ sources
PDE10A(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
childhood-onset nemaline myopathy Nemaline myopathy
1 gene
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TNNI1(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Chopra-amiel-gordon syndrome syndromic complex neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD17(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 109 →
Chorea Choreoacanthocytosis
1 gene
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1 of 1 corroborated by 2+ sources
VPS13A(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 1 →
Chromosome 10q deletion syndrome Developmental regression
1 gene
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1 of 1 corroborated by 2+ sources
EBF3(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 323 →
Chromosome xq25 duplication syndrome Semilobar holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
STAG2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
16q24.3 microdeletion syndrome Clinodactyly
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Clinodactyly kbg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Clinodactyly coffin-lowry syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RPS6KA3(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
COG4-congenital disorder of glycosylation Gross motor development delay
1 gene
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1 of 1 corroborated by 2+ sources
COG4(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Cognitive impairment with or without cerebellar ataxia Developmental regression
1 gene
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1 of 1 corroborated by 2+ sources
SCN8A(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
asphyxiating thoracic dystrophy 3 Clinodactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNC2H1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Atrial tachyarrhythmia, infra-hisian cardiac conduction disease Bronchial disease
1 gene
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1 of 1 corroborated by 2+ sources
TNNI3K(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.