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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Chorea hsd10 mitochondrial disease
1 gene
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1 of 1 corroborated by 2+ sources
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 1 →
Dyslipidemias hypercholesterolemia, familial, 1
1 gene
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1 of 1 corroborated by 2+ sources
LDLR(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
hypoinsulinemic hypoglycemia and body hemihypertrophy Lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
AKT2(3)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Carcinogenesis hypoparathyroidism-deafness-renal disease syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATA3(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Developmental regression hypotonia, ataxia, and delayed development syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EBF3(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 323 →
Developmental delay with ataxia, hypotonia, and facial dysmorphism Developmental regression
1 gene
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1 of 1 corroborated by 2+ sources
EBF3(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 323 →
Developmental regression IFIH1-related type 1 interferonopathy
1 gene
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1 of 1 corroborated by 2+ sources
IFIH1(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
dilated cardiomyopathy 1EE Sick sinus syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH6(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
dilated cardiomyopathy 1KK Nemaline myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MYPN(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Disorder of sex development Potassium deficiency
1 gene
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1 of 1 corroborated by 2+ sources
RXFP2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 143 →
Dna2-related mitochondrial dna deletion syndrome Seckel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNA2(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Dysbiosis Giant cell arteritis
1 gene
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1 of 1 corroborated by 2+ sources
TLR4(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 1 →
Chorea Dyskinesia with orofacial involvement
1 gene
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1 of 1 corroborated by 2+ sources
ADCY5(5)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Chorea Dyskinesia, familial, with facial myokymia
1 gene
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1 of 1 corroborated by 2+ sources
ADCY5(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Dyskinesia, limb and orofacial, infantile-onset Tooth disease
1 gene
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1 of 1 corroborated by 2+ sources
PDE10A(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Dyslipidemias dysosteosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
TCIRG1(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Clinodactyly Dystrophinopathy
1 gene
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DMD(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Chorea Early-onset spastic ataxia-myoclonic epilepsy-neuropathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AFG3L2(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Epidermolysa bullosa simplex and limb girdle muscular dystrophy Junctional epidermolysis bullosa
1 gene
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1 of 1 corroborated by 2+ sources
PLEC(4)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Epidermolysis bullosa simplex Junctional epidermolysis bullosa
1 gene
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1 of 1 corroborated by 2+ sources
KRT14(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
epidermolysis bullosa, junctional 7, with interstitial lung disease and nephrotic syndrome Junctional epidermolysis bullosa
1 gene
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1 of 1 corroborated by 2+ sources
ITGA3(7)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Carcinogenesis papillary renal cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MET(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —
Melas syndrome Periodic paralysis with later-onset distal motor neuropathy
1 gene
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ATP8(1)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 32 →
Peters plus syndrome Potassium deficiency
1 gene
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1 of 1 corroborated by 2+ sources
B3GLCT(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. Cluster 143 →
Corneal neovascularization peutz-jeghers syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STK11(2)
0.053 1.000 1.17e-3 1.90e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.