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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
familial sleep-related hypermotor epilepsy Focal onset epileptic seizure
1 gene
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1 of 1 corroborated by 2+ sources
CHRNB2(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. Cluster 273 →
Autism, x-linked Bruxism
1 gene
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1 of 1 corroborated by 2+ sources
MECP2(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. Cluster 61 →
Autism, x-linked Bulbar palsy
1 gene
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1 of 1 corroborated by 2+ sources
MECP2(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. Cluster 61 →
Benign myoclonic epilepsy Early onset epilepsy with developmental delay
1 gene
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1 of 1 corroborated by 2+ sources
CNTN2(4)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. Cluster 357 →
Congenital hearing disorder Digenic alport syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL4A3(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Cryoglobulinemia Hepatic fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
IFNL3(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Hepatic fibrosis Intrahepatic bile duct cancer
1 gene
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1 of 1 corroborated by 2+ sources
IFNL3(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Hepatic fibrosis Ovarian mucinous adenocarcinoma
1 gene
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1 of 1 corroborated by 2+ sources
IFNL3(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Cadasil hereditary breast carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ATRIP(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Hypocalcemia Hypoparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
PTH(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Hypoparathyroidism Rickets
1 gene
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1 of 1 corroborated by 2+ sources
PTH(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
C1q deficiency Exanthema
1 gene
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1 of 1 corroborated by 2+ sources
C1QA(5)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Congenital musculoskeletal anomalies Myelogenous leukemia
1 gene
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1 of 1 corroborated by 2+ sources
ABL1(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Non-syndromic cataract Sutural cataract
1 gene
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1 of 1 corroborated by 2+ sources
BFSP2(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. Cluster 43 →
Embryonal nuclear cataract Non-syndromic cataract
1 gene
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1 of 1 corroborated by 2+ sources
CRYBB3(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Cerebrooculofacioskeletal syndrome Cholestasis
1 gene
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1 of 1 corroborated by 2+ sources
ERCC1(5)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Cholestasis Cockayne syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ERCC1(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Gitelman syndrome Pfaundler-hurler syndrome
1 gene
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IDUA(1)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Clubfoot Pfaundler-hurler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PITX1(6)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Proximal spinal muscular atrophy Tay-sachs disease
1 gene
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SETX(1)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Leukocyte adhesion deficiency Skin ulcer
1 gene
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1 of 1 corroborated by 2+ sources
ITGB2(6)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Congenital malformation syndromes associated with short stature Male infertility testicular dysgenesis
1 gene
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SOS2(1)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Carotid artery thrombosis Microvillus inclusion disease
1 gene
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1 of 1 corroborated by 2+ sources
STXBP2(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Fabry disease Mitral valve disease
1 gene
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ACE(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. Cluster 195 →
Disseminated intravascular coagulation Factor xiii deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F13A1(6)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.