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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Colchicine resistance Hyperpituitarism
1 gene
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1 of 1 corroborated by 2+ sources
ABCB1(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 57 →
Gastro-entero-pancreatic neuroendocrine tumor hypoparathyroidism-deafness-renal disease syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATA3(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
hypotonia, ataxia, and delayed development syndrome Mobius syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EBF3(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
22q11 deletion syndrome Syntelencephaly
1 gene
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1 of 1 corroborated by 2+ sources
FGF8(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 96 →
22q11 deletion syndrome Septopreoptic holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
FGF8(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 96 →
Alkuraya-kucinskas syndrome Renal agenesis
1 gene
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1 of 1 corroborated by 2+ sources
BLTP1(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Alpha-1 antitrypsin deficiency Gastro-entero-pancreatic neuroendocrine tumor
1 gene
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1 of 1 corroborated by 2+ sources
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 245 →
17,20-lyase deficiency Amenorrhea
1 gene
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1 of 1 corroborated by 2+ sources
CYP17A1(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 346 →
Amenorrhea Steroid 17-alpha-monooxygenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP17A1(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 346 →
Amenorrhea hypercholesterolemia, autosomal dominant, type B
1 gene
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1 of 1 corroborated by 2+ sources
APOB(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Amenorrhea P450 oxidoreductase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
POR(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
amyotrophic lateral sclerosis type 6 Tremor
1 gene
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1 of 1 corroborated by 2+ sources
FUS(6)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Anorectal malformation Urocanate hydratase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
UROC1(8)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 197 →
Anterior cruciate ligament injury Secondary parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
CNR2(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Congenital pontocerebellar hypoplasia neurodegeneration, childhood-onset, with cerebellar atrophy
1 gene
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1 of 1 corroborated by 2+ sources
AGTPBP1(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Corpus callosum agenesis with facial anomalies and cerebellar ataxia Craniofacial microsomia
1 gene
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1 of 1 corroborated by 2+ sources
FRMD4A(3)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 48 →
Craniofacial microsomia Intestinal dysmotility syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO1(4)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 48 →
Craniofacial microsomia Deafness with labyrinthine aplasia, microtia, and microdontia
1 gene
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1 of 1 corroborated by 2+ sources
FGF3(7)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Cleft lip and palate Craniofaciocardiohepatic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AMOTL1(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Cyp2d6 deficiency Tremor
1 gene
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1 of 1 corroborated by 2+ sources
CYP2D6(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. Cluster 13 →
Cystitis systemic lupus erythematosus, susceptibility to, 1
1 gene
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1 of 1 corroborated by 2+ sources
TLR5(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Delpire-mcneill syndrome Uterine prolapse
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A2(5)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
Cor pulmonale Factor xi deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F11(4)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
familial ovarian cancer Hereditary breast and ovarian cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BRIP1(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —
fanconi anemia complementation group j Hereditary breast and ovarian cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BRIP1(2)
0.063 1.000 9.74e-4 1.67e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.