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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Alstrom syndrome Stickler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALMS1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
amyotrophic lateral sclerosis 26 with or without frontotemporal dementia Distal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TIA1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Angel-shaped phalangoepiphyseal dysplasia Developmental dysplasia of the hip
1 gene
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1 of 1 corroborated by 2+ sources
GDF5(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anterior cruciate ligament injury Hyperemia
1 gene
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1 of 1 corroborated by 2+ sources
CNR2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
anterior segment dysgenesis 7 Anterior segment mesenchymal dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
PXDN(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
anterior segment dysgenesis 8 Anterior segment mesenchymal dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
CPAMD8(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
aortic valve disease 3 Bicuspid aortic valve
1 gene
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1 of 1 corroborated by 2+ sources
ROBO4(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 188 →
Arrhythmogenic right ventricular dysplasia Naxos disease
1 gene
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1 of 1 corroborated by 2+ sources
JUP(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Angle closure glaucoma Neonatal diabetes-congenital hypothyroidism-congenital glaucoma-hepatic fibrosis-polycystic kidney syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLIS3(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Neurodegeneration with brain iron accumulation neurodegeneration with brain iron accumulation 4
1 gene
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1 of 1 corroborated by 2+ sources
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 92 →
Hemochromatosis neurodegeneration with brain iron accumulation 9
1 gene
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1 of 1 corroborated by 2+ sources
FTH1(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Neurodegeneration with brain iron accumulation neuroferritinopathy
1 gene
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1 of 1 corroborated by 2+ sources
FTL(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Bicuspid aortic valve NOTCH1-related AOS spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
NOTCH1(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
NYX-related retinopathy Oguchi disease
1 gene
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1 of 1 corroborated by 2+ sources
NYX(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 151 →
Anophthalmia Ocular dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
ELP4(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Aland island eye disease Oguchi disease
1 gene
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CACNA1F(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anophthalmia Orbital disease
1 gene
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1 of 1 corroborated by 2+ sources
RARB(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Avascular necrosis of bone Osteolysis, hereditary multicentric
1 gene
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1 of 1 corroborated by 2+ sources
MMP2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Metabolic bone disorder Osteolysis, hereditary multicentric
1 gene
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1 of 1 corroborated by 2+ sources
MMP2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Osteolysis, hereditary multicentric Osteonecrosis of medial femoral condyle
1 gene
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1 of 1 corroborated by 2+ sources
MMP2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Caveolinopathy Distal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
CAV3(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Cerebellar ataxia, areflexia, pes cavus, optic atrophy, and sensorineural hearing loss Congenital epicanthus
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A3(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 238 →
Blindness Cerebelloparenchymal disorder
1 gene
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1 of 1 corroborated by 2+ sources
PMPCA(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Cerebrotendinous xanthomatosis Metabolic bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
CYP27A1(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Childhood-onset sensorineural hearing impairment Perrault syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRORP(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 336 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.