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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Oguchi disease TRPM1-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TRPM1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 151 →
Nephrosclerosis Vascular ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL3A1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 334 →
Anophthalmia Waardenburg anophthalmia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMOC1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Stickler syndrome Wagner syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VCAN(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 248 →
Partington syndrome Wieacker syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZC4H2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Partington syndrome Wieacker-wolff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZC4H2(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Testicular disease Wilson disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP7B(7)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital hypothyroidism X-linked central congenital hypothyroidism with late-onset testicular enlargement
1 gene
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1 of 1 corroborated by 2+ sources
IGSF1(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 88 →
Testicular disease X-linked central congenital hypothyroidism with late-onset testicular enlargement
1 gene
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1 of 1 corroborated by 2+ sources
IGSF1(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 88 →
Hemochromatosis X-linked erythropoietic protoporphyria
1 gene
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1 of 1 corroborated by 2+ sources
ALAS2(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Partington syndrome X-linked female restricted facial dysmorphism, short stature, choanal atresia, intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
USP9X(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 320 →
Partington syndrome X-linked myopathy with excessive autophagy
1 gene
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1 of 1 corroborated by 2+ sources
RPL10(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 320 →
Intestinal disease Yao syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NOD2(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 382 →
Cleft palate and bilateral cleft lip Zunich neuroectodermal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIGL(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
combined immunodeficiency due to RELA haploinsufficiency Endocrine system disease
1 gene
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1 of 1 corroborated by 2+ sources
RELA(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Combined immunodeficiency with autoimmunity and spondylometaphyseal dysplasia Spondylometaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
ACP5(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 21 →
Anterior segment mesenchymal dysgenesis Congenital aphakia
1 gene
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FOXE3(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital brain dysgenesis due to glutamine synthetase deficiency Hepatic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
GLUL(6)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 57 →
Anterior segment mesenchymal dysgenesis Congenital cataract anterior segment dysgenesis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PITX3(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Bicuspid aortic valve Congenital erythroderma with palmoplantar keratoderma, hypotrichosis, and hyper-ige
1 gene
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1 of 1 corroborated by 2+ sources
DSG1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Congenital folate absorption defect Pancytopenia
1 gene
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1 of 1 corroborated by 2+ sources
SLC46A1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 411 →
Bicuspid aortic valve congenital heart defects, multiple types, 2
1 gene
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1 of 1 corroborated by 2+ sources
TAB2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 188 →
Congenital hydrocephalus SMARCC1-associated developmental dysgenesis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMARCC1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 293 →
Congenital hydrocephalus scott syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANO6(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 293 →
Congenital hydrocephalus Delta-sarcoglycan-related limb-girdle muscular dystrophy r6
1 gene
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1 of 1 corroborated by 2+ sources
SGCD(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.