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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital omphalocele Currarino syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PCSK5(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 94 →
Congenital septal defect of heart Currarino syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PCSK5(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Cerebral atrophy Deoxyguanosine kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DGUOK(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Angle closure glaucoma congenital myasthenic syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
CHAT(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anterior segment mesenchymal dysgenesis Congenital primary aphakia
1 gene
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1 of 1 corroborated by 2+ sources
FOXE3(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anterior segment mesenchymal dysgenesis Congenital sclerocornea
1 gene
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GJA8(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Connective and soft tissue disorder Nephrosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
COL3A1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 334 →
Corpus callosum agenesis with facial anomalies and robin sequence Partington syndrome
1 gene
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DDX3X(1)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Bronchial hyperreactivity Cramp-fasciculation syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRPA1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 206 →
Creatine phosphokinase elevation Distal myopathy
1 gene
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1 of 1 corroborated by 2+ sources
CAV3(5)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Anterior segment mesenchymal dysgenesis CYP1B1-related glaucoma with or without anterior segment dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
CYP1B1(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Cartilage disease Deafness-lymphedema-leukemia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATA2(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
autosomal recessive limb-girdle muscular dystrophy Delta-sarcoglycan-related limb-girdle muscular dystrophy r6
1 gene
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1 of 1 corroborated by 2+ sources
SGCD(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Erythrokeratodermia with ataxia Rosacea
1 gene
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1 of 1 corroborated by 2+ sources
ELOVL4(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Esophageal stenosis Esophageal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
SOD2(3)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Arrhythmogenic right ventricular dysplasia familial isolated arrhythmogenic right ventricular dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
DSC2(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 4 →
Fanconi anemia complementation group C Pancytopenia
1 gene
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1 of 1 corroborated by 2+ sources
FANCC(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Collagenous colitis Fatigue syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Fatigue syndrome Right hypoplastic heart syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX20(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 156 →
Congenital epicanthus fibrodysplasia ossificans progressiva
1 gene
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1 of 1 corroborated by 2+ sources
ACVR1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. Cluster 238 →
Bicuspid aortic valve Focal palmoplantar keratoderma with joint keratoses
1 gene
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1 of 1 corroborated by 2+ sources
DSG1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Folic acid deficiency Pancytopenia
1 gene
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1 of 1 corroborated by 2+ sources
DHFR(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Cartilage disease Gata2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GATA2(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
generalized epilepsy-paroxysmal dyskinesia syndrome Metabolic bone disorder
1 gene
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1 of 1 corroborated by 2+ sources
KCNMA1(2)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —
Genetic hyperferritinemia without iron overload Neurodegeneration with brain iron accumulation
1 gene
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1 of 1 corroborated by 2+ sources
FTL(4)
0.067 1.000 9.09e-4 1.58e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.