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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Bilateral generalized polymicrogyria Hemimegalencephaly
1 gene
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1 of 1 corroborated by 2+ sources
GRIN1(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Diabetes mellitus ketosis prone Hepatic adenoma
1 gene
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1 of 1 corroborated by 2+ sources
HNF1A(4)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Cryohydrocytosis Hereditary elliptocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A1(5)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Hereditary motor and sensory neuropathy Nail dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(4)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Hypercapnia Renal hypertension
1 gene
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1 of 1 corroborated by 2+ sources
NPPA(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Familial temporal lobe epilepsy lissencephaly with cerebellar hypoplasia
1 gene
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1 of 1 corroborated by 2+ sources
RELN(5)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
17q12 microdeletion syndrome Mayer-rokitansky-kuster-hauser syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HNF1B(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 23 →
Cardiac rhythm disease Paroxysmal tachycardia
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 129 →
Ectopic rhythm Paroxysmal tachycardia
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 129 →
Mayer-rokitansky-kuster-hauser syndrome Peho syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZNHIT3(6)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Hereditary angioedema Periodontal ehlers-danlos syndrome
1 gene
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1 of 1 corroborated by 2+ sources
C1S(3)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Arthralgia Porokeratosis
1 gene
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1 of 1 corroborated by 2+ sources
MVK(6)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Hepatic veno occlusive disease Porphyruria
1 gene
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HFE(1)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 196 →
Dermatofibrosarcoma protuberans Prostatic hyperplasia
1 gene
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1 of 1 corroborated by 2+ sources
PDGFB(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Binge eating disorder Isolated systolic hypertension
1 gene
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1 of 1 corroborated by 2+ sources
APOB(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 140 →
Absence epilepsy Birk-barel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNK9(5)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Blast crisis Hyper-igm immunodeficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AICDA(6)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 131 →
Bloom syndrome Hyper-igm immunodeficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UNG(5)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. Cluster 131 →
Bmpr1a-related juvenile polyposis Hereditary hemorrhagic telangiectasia
1 gene
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1 of 1 corroborated by 2+ sources
SMAD4(3)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Cebalid syndrome Focal cortical dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
MTOR(3)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Cebalid syndrome Hemimegalencephaly
1 gene
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1 of 1 corroborated by 2+ sources
MTOR(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Childhood-onset spinal muscular atrophy Distal muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
BICD2(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Conjunctivitis Skin hair eye pigmentation variation
1 gene
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1 of 1 corroborated by 2+ sources
HERC2(2)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Continuous spike and wave during slow wave sleep syndrome Familial temporal lobe epilepsy
1 gene
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GRIN2A(1)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —
Cortical occipital malformations Focal cortical dysplasia
1 gene
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TBR1(1)
0.111 0.500 9.09e-4 1.58e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.