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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
autosomal recessive osteopetrosis 2 Hypercalcemia
1 gene
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1 of 1 corroborated by 2+ sources
TNFSF11(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 262 →
bardet-biedl syndrome 16 Senior-loken syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SDCCAG8(6)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 8 →
Beta-propeller protein-associated neurodegeneration Oculocutaneous albinism
1 gene
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1 of 1 corroborated by 2+ sources
WDR45(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
congenital myasthenic syndrome 7 Thyroid gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
SYT2(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 34 →
Congenital nephrotic syndrome Hyperhomocysteinemia
1 gene
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1 of 1 corroborated by 2+ sources
NPHS1(4)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Congenital nephrotic syndrome Steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NPHS1(4)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Congenital primary lymphedema of gordon Lymphatic malformation
1 gene
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1 of 1 corroborated by 2+ sources
VEGFC(6)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Craniofacial deafness hand syndrome Waardenburg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PAX3(7)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 229 →
craniosynostosis 2 Posterior cortical atrophy
1 gene
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1 of 1 corroborated by 2+ sources
MSX2(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 93 →
Cryptogenic multifocal ulcerous stenosing enteritis Platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G4A(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Basal ganglia disease Cyp2d6 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP2D6(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Cyp2d6 deficiency Occupational disease
1 gene
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1 of 1 corroborated by 2+ sources
CYP2D6(3)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Cystic kidney disease with ventriculomegaly Steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Cytosolic phospholipase-a2 alpha deficiency associated bleeding disorder Platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLA2G4A(5)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Deaf blind hypopigmentation syndrome Waardenburg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(8)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
CEP164-related ciliopathy Senior-loken syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CEP164(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 8 →
CEP290-related ciliopathy Senior-loken syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CEP290(7)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Chromosome xq27.3-q28 duplication syndrome Congenital abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
FMR1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
ciliary dyskinesia, primary, 39 Costello syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LRRC56(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Byzanthine arch palate Ck syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NSDHL(7)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 381 →
Bile duct neoplasms Giant cell glioblastoma
1 gene
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1 of 1 corroborated by 2+ sources
EGFR(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Basal ganglia disease Biotin-thiamine-responsive basal ganglia disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC19A3(6)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
Bisphosphoglycerate mutase deficiency Erythrocytosis
1 gene
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1 of 1 corroborated by 2+ sources
BPGM(4)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 105 →
bleeding disorder, platelet-type, 21 Platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
FLI1(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. —
bleeding disorder, platelet-type, 22 Platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
EPHB2(2)
0.071 1.000 8.44e-4 1.50e-3 ✓ sig. Cluster 33 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.