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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital muscular hypertrophy-cerebral syndrome Congenital pes cavus
1 gene
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1 of 1 corroborated by 2+ sources
SMC1A(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
congenital myasthenic syndrome 10 Fetal akinesia deformation sequence
1 gene
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1 of 1 corroborated by 2+ sources
DOK7(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 34 →
congenital myasthenic syndrome 10 Postsynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DOK7(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 34 →
congenital myasthenic syndrome 17 Postsynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LRP4(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
congenital myasthenic syndrome 2A Postsynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHRNB1(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
congenital myasthenic syndrome 2C Postsynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHRNB1(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
congenital myasthenic syndrome 8 Postsynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AGRN(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 34 →
congenital myasthenic syndrome 9 Fetal akinesia deformation sequence
1 gene
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1 of 1 corroborated by 2+ sources
MUSK(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 34 →
congenital myasthenic syndrome 9 Postsynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MUSK(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 34 →
Congenital prekallikrein deficiency Hereditary corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
KLKB1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital aneurysm of ascending aorta Congenital primary aphakia
1 gene
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1 of 1 corroborated by 2+ sources
FOXE3(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital primary aphakia familial thoracic aortic aneurysm and aortic dissection
1 gene
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1 of 1 corroborated by 2+ sources
FOXE3(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital sensory neuropathy Tonic-clonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
NGF(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 330 →
Congenital aneurysm of ascending aorta Connective and soft tissue disorder
1 gene
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COL3A1(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Cornea plana Hereditary corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
KERA(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Corneal disease Rupture, spontaneous
1 gene
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1 of 1 corroborated by 2+ sources
COL5A1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Corneal disease pitt-hopkins syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TCF4(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 222 →
Coronary thrombosis Intellectual developmental disorder with retinitis pigmentosa
1 gene
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1 of 1 corroborated by 2+ sources
SCAPER(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Cardiac tamponade Coronary thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
PLAT(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital nonspherocytic hemolytic anemia Coronary vessel anomalies
1 gene
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1 of 1 corroborated by 2+ sources
GCLC(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Craniofacial anomalies with anterior segment dysgenesis Hereditary corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
VSX1(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 75 →
Cyp2d6 deficiency Tonic-clonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CYP2D6(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Colonic disease Specific learning disability
1 gene
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GHR(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
combined immunodeficiency due to STIM1 deficiency Congenital structural myopathy
1 gene
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1 of 1 corroborated by 2+ sources
STIM1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Atrioventricular septal defect Congenital aortic valve atresia
1 gene
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FOXP1(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.