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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Xeroderma pigmentosum xeroderma pigmentosum group B
1 gene
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1 of 1 corroborated by 2+ sources
ERCC3(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 86 →
Xeroderma pigmentosum xeroderma pigmentosum group C
1 gene
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1 of 1 corroborated by 2+ sources
XPC(8)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 86 →
Xeroderma pigmentosum xeroderma pigmentosum group E
1 gene
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1 of 1 corroborated by 2+ sources
DDB2(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 86 →
Xeroderma pigmentosum xeroderma pigmentosum group F
1 gene
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1 of 1 corroborated by 2+ sources
ERCC4(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital pes cavus xeroderma pigmentosum group G
1 gene
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1 of 1 corroborated by 2+ sources
ERCC5(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Xeroderma pigmentosum xeroderma pigmentosum group G
1 gene
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1 of 1 corroborated by 2+ sources
ERCC5(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 86 →
Xeroderma pigmentosum xeroderma pigmentosum variant type
1 gene
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1 of 1 corroborated by 2+ sources
POLH(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 86 →
Paralysis Ventricular outflow obstruction
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Paranoia pitt-hopkins syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TCF4(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 222 →
Dopamine transporter deficiency syndrome Paranoia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A3(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Paranoia SLC6A3-related dopamine transporter deficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A3(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Paranoia Tyrosine kinase 2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TYK2(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Paranoia spermatogenic failure 46
1 gene
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1 of 1 corroborated by 2+ sources
DNAH8(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Partial deficiency of methylmalonyl-coenzyme a mutase Vitamin b deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MMUT(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Periodic paralysis with transient compartment-like syndrome Thyrotoxic periodic paralysis
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1S(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Periprosthetic osteolysis Ulnar-mammary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX3(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Periventricular heterotopia with microcephaly, autosomal recessive Periventricular nodular heterotopia
1 gene
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1 of 1 corroborated by 2+ sources
ARFGEF2(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Periventricular laminar heterotopia Periventricular nodular heterotopia
1 gene
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1 of 1 corroborated by 2+ sources
ARFGEF2(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Periventricular nodular heterotopia periventricular nodular heterotopia 7
1 gene
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1 of 1 corroborated by 2+ sources
NEDD4L(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Coronary thrombosis platelet-type bleeding disorder 11
1 gene
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1 of 1 corroborated by 2+ sources
GP6(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Hyperoxaluria primary hyperoxaluria type 3
1 gene
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1 of 1 corroborated by 2+ sources
HOGA1(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 296 →
Prostatic disease Tonic-clonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
OXT(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
protein S deficiency Thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
PROS1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital nonspherocytic hemolytic anemia pyruvate kinase deficiency of red cells
1 gene
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1 of 1 corroborated by 2+ sources
PKLR(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Cachexia lymphoproliferative syndrome 2
1 gene
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1 of 1 corroborated by 2+ sources
CD27(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 76 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.