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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Central serous retinopathy Genetic hemolytic uremic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CFH(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 107 →
Central serous retinopathy neuropathy, hereditary sensory and autonomic, type 2A
1 gene
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1 of 1 corroborated by 2+ sources
WNK1(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Cerebellar ataxia with deafness and narcolepsy Deglutition disorder
1 gene
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1 of 1 corroborated by 2+ sources
DNMT1(5)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Cerebellar ataxia, deafness, and narcolepsy Deglutition disorder
1 gene
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1 of 1 corroborated by 2+ sources
DNMT1(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2N Trichothiodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
AARS1(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 1A Demyelinating diseases
1 gene
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1 of 1 corroborated by 2+ sources
PMP22(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Childhood apraxia of speech Silver-russell syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXP2(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 199 →
Arthrogryposis childhood-onset nemaline myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TNNI1(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 202 →
Chromosome 16p13.3 deletion syndrome Hypertrichosis
1 gene
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CREBBP(1)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Ciliary dyskinesia, with or without situs inversus primary ciliary dyskinesia 3
1 gene
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1 of 1 corroborated by 2+ sources
DNAH5(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 9 →
Ataxia Duchenne muscular dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
DMD(5), SNCA(2)
0.041 0.095 7.03e-4 1.34e-3 ✓ sig. —
Bell's palsy Diffuse idiopathic skeletal hyperostosis
2 genes
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CDC5L(1), SUPT3H(1)
0.030 0.182 7.00e-4 1.34e-3 ✓ sig. —
Amblyopia Night blindness, congenital stationary
2 genes
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1 of 2 corroborated by 2+ sources
CACNA1F(3), USH2A(1)
0.041 0.080 7.42e-4 1.39e-3 ✓ sig. —
Atrial flutter Ileocolitis
2 genes
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PHLDB2(1), PLCXD2(1)
0.023 0.250 7.50e-4 1.40e-3 ✓ sig. —
Insulin dependent diabetes mellitus secretory diarrhea syndrome Ritscher-schinzler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CCDC22(5)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic behavioral Muir-torre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MSH6(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 166 →
Intellectual developmental disorder dysmorphic behavioral mismatch repair cancer syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
MSH6(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 166 →
Cortical dysplasia Intellectual developmental disorder speech autism dysmorphic
1 gene
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TBR1(1)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 275 →
Chilblain lupus Interferonopathy
1 gene
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1 of 1 corroborated by 2+ sources
SAMHD1(4)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 150 →
Arteritis Coronary artery vasospasm
1 gene
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1 of 1 corroborated by 2+ sources
PON1(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Esophageal achalasia Triple a syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AAAS(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Coronary artery vasospasm Ventricular ectopy
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 315 →
Intestinal perforation Ventricular ectopy
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 315 →
Au-kline syndrome Von hippel-lindau syndrome
1 gene
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1 of 1 corroborated by 2+ sources
VHL(7)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 385 →
Resistant hypertension Ventricular ectopy
1 gene
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1 of 1 corroborated by 2+ sources
NOS3(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 315 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.