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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Ductal carcinoma Hereditary diffuse gastric and lobular breast cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDH1(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hereditary diffuse gastric and lobular breast cancer syndrome Prostatic intraepithelial neoplasia
1 gene
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1 of 1 corroborated by 2+ sources
CDH1(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hereditary hemolytic anemia inherited glutathione synthetase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GSS(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 105 →
Demyelinating diseases Hereditary neuropathy with liability to pressure palsies
1 gene
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1 of 1 corroborated by 2+ sources
PMP22(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hermansky-pudlak syndrome hermansky-pudlak syndrome 8
1 gene
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1 of 1 corroborated by 2+ sources
BLOC1S3(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome Ocular albinism with sensorineural deafness
1 gene
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1 of 1 corroborated by 2+ sources
AP3D1(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hermansky-pudlak syndrome hermansky-pudlak syndrome 10
1 gene
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1 of 1 corroborated by 2+ sources
AP3D1(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hermansky-pudlak syndrome hermansky-pudlak syndrome 2
1 gene
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1 of 1 corroborated by 2+ sources
AP3B1(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome hermansky-pudlak syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
HPS1(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome hermansky-pudlak syndrome 11
1 gene
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1 of 1 corroborated by 2+ sources
BLOC1S5(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome hermansky-pudlak syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
HPS3(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hermansky-pudlak syndrome hermansky-pudlak syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
HPS4(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome hermansky-pudlak syndrome 5
1 gene
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1 of 1 corroborated by 2+ sources
HPS5(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome hermansky-pudlak syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
HPS6(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome hermansky-pudlak syndrome 7
1 gene
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1 of 1 corroborated by 2+ sources
DTNBP1(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hermansky-pudlak syndrome hermansky-pudlak syndrome 9
1 gene
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1 of 1 corroborated by 2+ sources
BLOC1S6(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hyperinsulinemic hypoglycemia hyperinsulinemic hypoglycemia with polycystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
PMM2(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hyperinsulinemic hypoglycemia Hyperinsulinism-hyperammonemia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLUD1(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 36 →
Hyperphosphatasia with intellectual disability syndrome Zunich neuroectodermal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIGL(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hyperphosphatasia with intellectual disability syndrome hyperphosphatasia with intellectual disability syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
PGAP3(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 337 →
Hyperphosphatasia with intellectual disability syndrome hyperphosphatasia with intellectual disability syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
PIGV(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 337 →
Hyperphosphatasia with intellectual disability syndrome hyperphosphatasia with intellectual disability syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
PIGY(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 337 →
Hereditary hemolytic anemia Hyperthermia
1 gene
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1 of 1 corroborated by 2+ sources
GPX1(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hypertrichosis X-linked congenital generalized hypertrichosis
1 gene
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1 of 1 corroborated by 2+ sources
SOX3(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hypertrichosis SOX3-related X-linked pituitary hormone deficiency with or without intellectual developmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
SOX3(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.