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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Omenn syndrome recombinase activating gene 1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
RAG1(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 173 →
Omenn syndrome recombinase activating gene 2 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
RAG2(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 173 →
Combined immunodeficiency-hypogammaglobulinemia-skeletal anomalies syndrome due to ikbka deficiency Congenital skin anomaly
1 gene
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1 of 1 corroborated by 2+ sources
CHUK(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Combined immunodeficiency-hypogammaglobulinemia-skeletal anomalies syndrome due to ikbka deficiency Skin abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
CHUK(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Common migraine hypercholesterolemia, familial, 1
1 gene
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1 of 1 corroborated by 2+ sources
LDLR(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 194 →
Common migraine Tricuspid atresia
1 gene
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LRP1(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 194 →
Comp-related skeletal dysplasia Epiphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COMP(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 248 →
Complex partial epilepsy Perisylvian syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SCN3A(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Congenital atransferrinemia Iron deficiency anemia
1 gene
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1 of 1 corroborated by 2+ sources
TF(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Brachycephaly Congenital central hypothyroidism
1 gene
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TRHR(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Congenital cleft hand Ectrodactyly
1 gene
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1 of 1 corroborated by 2+ sources
DLX5(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Colchicine resistance Congenital dyserythropoietic anemia
1 gene
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1 of 1 corroborated by 2+ sources
ABCB1(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 57 →
Congenital dyserythropoietic anemia glutaryl-CoA dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GCDH(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Congenital hypoplasia of pancreas monogenic diabetes
1 gene
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1 of 1 corroborated by 2+ sources
PDX1(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Congenital microtia Headache
1 gene
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1 of 1 corroborated by 2+ sources
PRKRA(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 126 →
Ectrodactyly Sebaceous gland neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
LEF1(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Omenn syndrome severe combined immunodeficiency due to DCLRE1C deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DCLRE1C(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 173 →
Omenn syndrome severe combined immunodeficiency, autosomal recessive, T cell-negative, B cell-negative, NK cell-negative, due to adenosine deaminase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ADA(4)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Headache short stature, amelogenesis imperfecta, and skeletal dysplasia with scoliosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC10A7(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 126 →
Saldino-noonan syndrome short-rib thoracic dysplasia 11 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNC2I2(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 22 →
Craniodiaphyseal dysplasia short-rib thoracic dysplasia 16 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
IFT52(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 22 →
Saldino-noonan syndrome short-rib thoracic dysplasia 17 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNLT2B(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 22 →
Craniodiaphyseal dysplasia short-rib thoracic dysplasia 7 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
WDR35(6)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 22 →
Saldino-noonan syndrome short-rib thoracic dysplasia 8 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNC2I1(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 22 →
Beckwith-wiedemann syndrome silver-russell syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
IGF2(6)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.