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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
renal tubular acidosis, distal, 2, with progressive sensorineural hearing loss Urogenital abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cardiac conduction disease Repolarization syndrome
1 gene
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CACNB2(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Pulmonary alveolar proteinosis Respiratory distress with surfactant metabolism deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Retinoblastoma Small cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
RB1(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 3 →
SEC61A1 deficiency Tubulointerstitial kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
SEC61A1(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 23 →
Serum bilirubin level Small cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
UGT1A1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Pulmonary alveolar proteinosis SFTPC-related interstitial lung disease
1 gene
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1 of 1 corroborated by 2+ sources
SFTPC(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Ellis-van creveld syndrome short-rib thoracic dysplasia 7 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
WDR35(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Adrenocortical carcinoma Small cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TP53(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 3 →
Choroid plexus carcinoma Small cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TP53(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 3 →
Choroid plexus papilloma Small cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TP53(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 3 →
Small cell carcinoma Small cell ovary carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SMARCA4(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Kabuki syndrome spastic paraplegia, intellectual disability, nystagmus, and obesity
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Brain tumor-polyposis syndrome Splenic disease
1 gene
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1 of 1 corroborated by 2+ sources
APC(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Disseminated intravascular coagulation Spontaneous coronary artery dissection
1 gene
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1 of 1 corroborated by 2+ sources
F3(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 55 →
Spontaneous coronary artery dissection Von willebrand disorder
1 gene
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1 of 1 corroborated by 2+ sources
F3(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Collagenopathy Synovitis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Coxa plana Synovitis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Czech dysplasia Synovitis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Dysspondyloenchondromatosis Synovitis
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Polycythemia vera Tatton-Brown-Rahman overgrowth syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNMT3A(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
congenital myasthenic syndrome 17 Maffucci syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LRP4(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Bone marrow failure syndromes Congenital progressive bone marrow failure-b-cell immunodeficiency-skeletal dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYSM1(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 3 →
Congenital prothrombin deficiency Disseminated intravascular coagulation
1 gene
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1 of 1 corroborated by 2+ sources
F2(5)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Cataract-microcornea syndrome Congenital sclerocornea
1 gene
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1 of 1 corroborated by 2+ sources
GJA8(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.