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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Collagenopathy Maffucci syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Coxa plana Maffucci syndrome
1 gene
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COL2A1(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Czech dysplasia Maffucci syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Dysspondyloenchondromatosis Maffucci syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 11 →
Male infertility globozoospermia Xy gonadal dysgenesis syndrome
1 gene
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PPP2R3C(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Male infertility large polyploid spermatozoa spermatogenic failure 56
1 gene
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1 of 1 corroborated by 2+ sources
DNAH10(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 133 →
Male infertility large polyploid spermatozoa spermatogenic failure 46
1 gene
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1 of 1 corroborated by 2+ sources
DNAH8(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 133 →
Male infertility large polyploid spermatozoa spermatogenic failure 5
1 gene
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1 of 1 corroborated by 2+ sources
AURKC(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Imperforate anus MED12-related intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MED12(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Maffucci syndrome Metaphyseal enchondromatosis
1 gene
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1 of 1 corroborated by 2+ sources
IDH1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Anencephaly methylcobalamin deficiency type cblE
1 gene
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1 of 1 corroborated by 2+ sources
MTRR(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 121 →
Intracellular cobalamin metabolism disorder methylcobalamin deficiency type cblG
1 gene
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1 of 1 corroborated by 2+ sources
MTR(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Intracellular cobalamin metabolism disorder methylmalonic acidemia with homocystinuria, type cblJ
1 gene
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1 of 1 corroborated by 2+ sources
ABCD4(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 246 →
Intracellular cobalamin metabolism disorder methylmalonic aciduria and homocystinuria type cblF
1 gene
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1 of 1 corroborated by 2+ sources
LMBRD1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Microcephalic dwarfism Polycythemia vera
1 gene
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1 of 1 corroborated by 2+ sources
DNMT3A(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Hepatic insufficiency Mucocutaneous ulceration
1 gene
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1 of 1 corroborated by 2+ sources
RELA(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Growth retardation, developmental delay, coarse facies, and early death Venous insufficiency
1 gene
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1 of 1 corroborated by 2+ sources
FTO(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Diabetic polyneuropathy Growth retardation, developmental delay, coarse facies, and early death
1 gene
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1 of 1 corroborated by 2+ sources
FTO(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital digestive system anomaly Haddad syndrome
1 gene
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RET(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Haddad syndrome Medullary thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
RET(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Haddad syndrome multiple endocrine neoplasia type 2B
1 gene
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1 of 1 corroborated by 2+ sources
RET(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Disseminated intravascular coagulation Hereditary antithrombin deficiency
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Congenital joint contractures hereditary sensory and autonomic neuropathy type 6
1 gene
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1 of 1 corroborated by 2+ sources
DST(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Disseminated intravascular coagulation hereditary thrombophilia due to congenital protein C deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PROC(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
heyn-sproul-jackson syndrome Polycythemia vera
1 gene
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1 of 1 corroborated by 2+ sources
DNMT3A(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.