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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Aplasia cutis congenita with epibulbar dermoids Schimmelpenning-feuerstein-mims syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KRAS(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Dominantly inherited sensory neuropathy Episodic pain syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SCN11A(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Early onset vitamin b6 dependent epilepsy Neonatal convulsions
1 gene
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1 of 1 corroborated by 2+ sources
ALDH7A1(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Eichsfeld type congenital muscular dystrophy Multiminicore myopathy
1 gene
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1 of 1 corroborated by 2+ sources
SELENON(3)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Anuria Asthenozoospermia
1 gene
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1 of 1 corroborated by 2+ sources
PLAU(2)
0.167 0.333 5.84e-4 1.16e-3 ✓ sig. —
Arterial occlusive disease Hepatic lipase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
LIPC(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 123 →
Arthrogryposis with oculomotor limitation and retinal anomalies Congenital joint contractures
1 gene
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1 of 1 corroborated by 2+ sources
PIEZO2(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Asperger syndrome Behavior disorders
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A4(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 156 →
Ataxia with polyneuropathy Optic neuropathy
1 gene
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ATP6(1)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Atrial tachyarrhythmia, infra-hisian cardiac conduction disease Cardiac conduction disease
1 gene
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1 of 1 corroborated by 2+ sources
TNNI3K(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 4 →
Atrophia bulborum heritaria Exudative vitreoretinopathy
1 gene
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1 of 1 corroborated by 2+ sources
NDP(4)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
autosomal recessive cutis laxa type 2A Benign pemphigus
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
autosomal recessive cutis laxa type 2A Darier disease
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
autosomal recessive cutis laxa type 2B Benign pemphigus
1 gene
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1 of 1 corroborated by 2+ sources
PYCR1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 80 →
autosomal recessive cutis laxa type 2B Darier disease
1 gene
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1 of 1 corroborated by 2+ sources
PYCR1(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 80 →
autosomal recessive cutis laxa type 2C Benign pemphigus
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 80 →
autosomal recessive cutis laxa type 2C Darier disease
1 gene
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1 of 1 corroborated by 2+ sources
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 80 →
autosomal recessive cutis laxa type 2D Benign pemphigus
1 gene
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1 of 1 corroborated by 2+ sources
ATP6V1A(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 80 →
autosomal recessive cutis laxa type 2D Darier disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP6V1A(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 80 →
Bartter syndrome renal tubular dysgenesis of genetic origin
1 gene
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1 of 1 corroborated by 2+ sources
REN(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Bartter syndrome neonatal severe primary hyperparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
CASR(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Bartter syndrome Sensorineural deafness with renal dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
BSND(6)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Bartter syndrome Hypokalemia-hypomagnesemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC12A3(2)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —
Benign familial pemphigus Benign pemphigus
1 gene
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1 of 1 corroborated by 2+ sources
ATP2C1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. Cluster 80 →
Lucey-driscoll syndrome Serum bilirubin level
1 gene
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1 of 1 corroborated by 2+ sources
UGT1A1(3)
0.100 1.000 5.84e-4 1.16e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.