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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital venous anomaly cutis laxa, autosomal dominant 1
1 gene
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1 of 1 corroborated by 2+ sources
ELN(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
cutis laxa, autosomal dominant 1 Varicose veins
1 gene
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1 of 1 corroborated by 2+ sources
ELN(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Caveolinopathy Tubular aggregate myopathy
1 gene
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1 of 1 corroborated by 2+ sources
CAV3(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 217 →
Cerebellar ataxia with deafness and narcolepsy Cerebral atrophy
1 gene
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1 of 1 corroborated by 2+ sources
DNMT1(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Cerebellar ataxia, deafness, and narcolepsy Cerebral atrophy
1 gene
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1 of 1 corroborated by 2+ sources
DNMT1(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Cerebellar cortical atrophy Hereditary elliptocytosis
1 gene
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MYO5A(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Cerebellar diseases Intellectual developmental disorder microcephaly cerebellar
1 gene
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1 of 1 corroborated by 2+ sources
CASK(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Cerebellar diseases Mowat-wilson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZEB2(7)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 130 →
Cerebellar diseases joubert syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
AHI1(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Cerebellar diseases Revesz debuse syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TINF2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 130 →
Cerebellar diseases Revesz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TINF2(6)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 130 →
Cerebral atrophy Intellectual developmental disorder expressive speech dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
SETBP1(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 271 →
Cerebral atrophy Schinzel-Giedion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SETBP1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 271 →
Cerebral atrophy hyperinsulinemic hypoglycemia with polycystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
PMM2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Cervical dystonia Torsion dystonia
1 gene
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1 of 1 corroborated by 2+ sources
CIZ1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 167 →
Charcot-Marie-Tooth disease dominant intermediate E Hereditary motor and sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
INF2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 207 →
Charcot-Marie-Tooth disease type 2A2 Hereditary motor and sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
MFN2(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 207 →
Chiari-frommel syndrome obsolete early infantile epileptic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
GAD1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 325 →
Childhood apraxia of speech Russell-silver syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FOXP2(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 199 →
Childhood ataxia with cns hypomyelination leukoencephalopathy with vanishing white matter 3
1 gene
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1 of 1 corroborated by 2+ sources
EIF2B3(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 170 →
Childhood ataxia with cns hypomyelination leukoencephalopathy with vanishing white matter 1
1 gene
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1 of 1 corroborated by 2+ sources
EIF2B1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 170 →
Benign hereditary chorea Choreoacanthocytosis
1 gene
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1 of 1 corroborated by 2+ sources
VPS13A(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 1 →
Chromophobe renal cell carcinoma Diabetes mellitus ketosis prone
1 gene
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1 of 1 corroborated by 2+ sources
HNF1A(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
ciliary dyskinesia, primary, 39 Epidermal nevus
1 gene
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1 of 1 corroborated by 2+ sources
LRRC56(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 18 →
Coasy protein-associated neurodegeneration Hallervorden spatz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COASY(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.