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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Frontonasal dysplasia Frontonasal dysplasia with alopecia and genital anomaly
1 gene
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1 of 1 corroborated by 2+ sources
ALX4(7)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Frontonasal dysplasia Frontonasal dysplasia, severe microphthalmia, severe facial clefting syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALX1(7)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Frontonasal dysplasia frontorhiny
1 gene
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1 of 1 corroborated by 2+ sources
ALX3(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Gallbladder disease progressive familial intrahepatic cholestasis type 3
1 gene
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1 of 1 corroborated by 2+ sources
ABCB4(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
generalized epilepsy-paroxysmal dyskinesia syndrome Gingival diseases
1 gene
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1 of 1 corroborated by 2+ sources
KCNMA1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Genetic syndromic pierre robin syndrome Mandibulofacial dysostosis
1 gene
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1 of 1 corroborated by 2+ sources
EFTUD2(7)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Genetic transient congenital hypothyroidism Thyroid dyshormonogenesis
1 gene
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1 of 1 corroborated by 2+ sources
DUOX2(6)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 88 →
Gingival diseases Hyaline fibromatosis
1 gene
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1 of 1 corroborated by 2+ sources
ANTXR2(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 406 →
Gingival diseases Gingivitis
1 gene
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1 of 1 corroborated by 2+ sources
TNFRSF8(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 406 →
GNPTAB-mucolipidosis Mucolipidosis
1 gene
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1 of 1 corroborated by 2+ sources
GNPTAB(7)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
GNPTG-mucolipidosis Mucolipidosis
1 gene
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1 of 1 corroborated by 2+ sources
GNPTG(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 91 →
Renal hypertension Sebastian syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH9(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Collagenopathy Rhegmatogenous retinal detachment
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 11 →
Coxa plana Rhegmatogenous retinal detachment
1 gene
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COL2A1(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 11 →
Czech dysplasia Rhegmatogenous retinal detachment
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 11 →
Dysspondyloenchondromatosis Rhegmatogenous retinal detachment
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 11 →
kniest dysplasia Rhegmatogenous retinal detachment
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 11 →
Exudative retinopathy RHO-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RHO(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Congenital septal defect of heart Right cardiac ventricular dilatation
1 gene
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BMPR2(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Rufous oculocutaneous albinism Skin hair eye pigmentation variation
1 gene
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1 of 1 corroborated by 2+ sources
TYRP1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 298 →
Russell-silver syndrome silver-russell syndrome 5
1 gene
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1 of 1 corroborated by 2+ sources
HMGA2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Sensory peripheral neuropathy Wilson disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP7B(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Severe neonatal spondylometaphyseal dysplasia Shwachman-diamond syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SBDS(7)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 159 →
Mucolipidosis Sialidosis
1 gene
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1 of 1 corroborated by 2+ sources
NEU1(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Russell-silver syndrome silver-russell syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
IGF2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.