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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
11p partial monosomy syndrome Ambiguous genitalia
1 gene
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1 of 1 corroborated by 2+ sources
WT1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 35 →
Ambiguous genitalia Denys drash syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WT1(6)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 35 →
Ambiguous genitalia Drash syndrome
1 gene
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1 of 1 corroborated by 2+ sources
WT1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 35 →
Ambiguous genitalia wilms tumor 1
1 gene
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1 of 1 corroborated by 2+ sources
WT1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 35 →
Ambiguous genitalia Congenital idiopathic intestinal pseudoobstruction
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
anemia, nonspherocytic hemolytic, due to G6PD deficiency Glucose-6-phosphate dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
G6PD(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 87 →
Aneuploidy microcephaly with or without chorioretinopathy, lymphedema, or intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
KIF11(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Angiofollicular ganglionic hyperplasia Glucose-6-phosphate dehydrogenase deficiency
1 gene
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IL6(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Angiolymphoid hyperplasia Glucose-6-phosphate dehydrogenase deficiency
1 gene
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IL6(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Anhidrotic ectodermal dysplasia Christ-siemens-touraine syndrome
1 gene
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EDA(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 117 →
Anomalous pulmonary venous Congenital hip dysplasia
1 gene
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PSMC3(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Anterior cruciate ligament injury Immune system disorder
1 gene
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1 of 1 corroborated by 2+ sources
CNR2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 255 →
Aortic rupture Congenital pectus carinatum
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Aortic rupture Coronary artery dissection
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Aplasia cutis congenita Chromosome 19q13.11 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
UBA2(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Aplasia cutis congenita Epidermolysa bullosa simplex and limb girdle muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
PLEC(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Aplasia cutis congenita PLEC-related muscular dystrophy-epidermolysis bullosa simplex spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
PLEC(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Arachnodactyly Congenital pectus carinatum
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Arachnodactyly Coronary artery dissection
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Arachnodactyly Congenital hernia of foramen of bochdalek
1 gene
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EFEMP1(1)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Arachnodactyly Simpson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KAT6B(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Arachnodactyly KAT6B-related multiple congenital anomalies syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KAT6B(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Arginase deficiency Immune system disorder
1 gene
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1 of 1 corroborated by 2+ sources
ARG1(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 255 →
Arhinia-choanal atresia-microphthalmia syndrome Facioscapulohumeral muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SMCHD1(6)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 313 →
arterial calcification, generalized, of infancy, 1 Pseudoxanthoma elasticum
1 gene
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1 of 1 corroborated by 2+ sources
ENPP1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 128 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.