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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Arachnodactyly Ck syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NSDHL(7)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 381 →
Coach syndrome Rhyns syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TMEM67(6)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 306 →
Coach syndrome joubert syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
INPP5E(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Coach syndrome MORM syndrome
1 gene
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1 of 1 corroborated by 2+ sources
INPP5E(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Coach syndrome OFD1-related ciliopathy
1 gene
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1 of 1 corroborated by 2+ sources
OFD1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Cohen-gibson syndrome Weaver syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EED(7)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 44 →
Colchicine resistance Hematologic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ABCB1(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Cole disease Pseudoxanthoma elasticum
1 gene
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1 of 1 corroborated by 2+ sources
ENPP1(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 128 →
combined immunodeficiency due to MALT1 deficiency Malt lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
MALT1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 324 →
combined immunodeficiency due to STIM1 deficiency Vacuolar myopathy
1 gene
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1 of 1 corroborated by 2+ sources
STIM1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 217 →
Cataract-corneal dystrophy syndrome Commissural facial cleft
1 gene
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1 of 1 corroborated by 2+ sources
PAX6(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Commissural facial cleft PAX6-related ocular dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
PAX6(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Conductive hearing loss kbg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ANKRD11(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Conductive hearing loss Congenital idiopathic intestinal pseudoobstruction
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 62 →
Conductive hearing loss Otopalatodigital spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 62 →
Conductive hearing loss Terminal osseous dysplasia with pigmentary defects
1 gene
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1 of 1 corroborated by 2+ sources
FLNA(6)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 62 →
Central areolar choroidal dystrophy cone dystrophy 3
1 gene
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1 of 1 corroborated by 2+ sources
GUCA1A(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 45 →
Congenital adrenal hyperplasia due to 21-hydroxylase deficiency Hyperandrogenism
1 gene
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1 of 1 corroborated by 2+ sources
CYP21A2(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 339 →
Congenital aortic valve atresia Malt lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
FOXP1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 324 →
Congenital atransferrinemia Hypochromic microcytic anemia
1 gene
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1 of 1 corroborated by 2+ sources
TF(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Congenital contracture of limbs and face, hypotonia, developmental delay syndrome Sheldon-hall syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NALCN(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Congenital corneal opacity Congenital ptosis
1 gene
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1 of 1 corroborated by 2+ sources
ZFHX4(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 279 →
Congenital diarrhea Congenital tufting enteropathy
1 gene
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1 of 1 corroborated by 2+ sources
EPCAM(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Congenital diarrhea Duodenal atresia
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2C(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 172 →
Congenital factor xi deficiency Intracranial thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
F11(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.