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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Genetic lipodystrophy Hypercholanemia
1 gene
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1 of 1 corroborated by 2+ sources
EPHX1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Genetic peripheral neuropathy hereditary peripheral neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
IGHMBP2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 206 →
glaucoma 3, primary congenital, d Primary congenital glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
LTBP2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
glaucoma 3, primary congenital, d Weill-marchesani syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LTBP2(7)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
GLUT1 deficiency syndrome Paroxysmal dystonic choreoathetosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
glutaryl-CoA dehydrogenase deficiency Tyrosinemia
1 gene
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1 of 1 corroborated by 2+ sources
GCDH(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 247 →
Glycinuria with/without oxalate urolithiasis hartnup disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A19(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Glycogen phosphorylase kinase deficiency glycogen storage disease IXd
1 gene
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1 of 1 corroborated by 2+ sources
PHKA1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Glycogen phosphorylase kinase deficiency glycogen storage disease IXb
1 gene
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1 of 1 corroborated by 2+ sources
PHKB(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Glycogen phosphorylase kinase deficiency glycogen storage disease IXc
1 gene
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1 of 1 corroborated by 2+ sources
PHKG2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Greither disease Palmoplantar keratoderma with congenital alopecia
1 gene
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1 of 1 corroborated by 2+ sources
GJA1(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 92 →
Greither disease Peripheral neuropathy with sensorineural hearing impairment syndrome
1 gene
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GJB3(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Liddle syndrome renal tubular dysgenesis of genetic origin
1 gene
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1 of 1 corroborated by 2+ sources
REN(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 95 →
Liddle syndrome pseudohypoaldosteronism, type IB1, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
SCNN1A(7)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 95 →
Brain tumor-polyposis syndrome Macrocytic anemia
1 gene
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1 of 1 corroborated by 2+ sources
APC(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 41 →
Familial adenomatous polyposis Macrocytic anemia
1 gene
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1 of 1 corroborated by 2+ sources
APC(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 41 →
gastric adenocarcinoma and proximal polyposis of the stomach Macrocytic anemia
1 gene
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1 of 1 corroborated by 2+ sources
APC(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 41 →
Majeed syndrome Multifocal osteomyelitis
1 gene
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1 of 1 corroborated by 2+ sources
LPIN2(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 216 →
Male breast neoplasms Partial androgen insensitivity syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AR(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 193 →
Mandibuloacral dysplasia Severe lipodystrophic laminopathy
1 gene
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1 of 1 corroborated by 2+ sources
LMNA(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 65 →
Dilated cardiomyopathy-hypergonadotropic hypogonadism syndrome Mandibuloacral dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
LMNA(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 65 →
Lipoatrophic diabetes mellitus Mandibuloacral dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
LMNA(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 65 →
Metaphyseal enchondromatosis Paroxysmal extreme pain disorder
1 gene
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IDH1(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 164 →
methylcobalamin deficiency type cblE Neural tube defects, folate-sensitive
1 gene
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1 of 1 corroborated by 2+ sources
MTRR(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 121 →
methylcobalamin deficiency type cblG Neural tube defects, folate-sensitive
1 gene
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1 of 1 corroborated by 2+ sources
MTR(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 121 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.