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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cinca syndrome Cryopyrin-associated periodic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NLRP3(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 192 →
Cinca syndrome Pericardial effusion
1 gene
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1 of 1 corroborated by 2+ sources
NLRP3(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Claudication Mild cognitive impairment
1 gene
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AGXT2(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Clear cell papillary renal cell carcinoma Waardenburg syndrome type 2
1 gene
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1 of 1 corroborated by 2+ sources
MITF(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Cataract-corneal dystrophy syndrome Cleft eyelid
1 gene
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PAX6(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Cleft eyelid PAX6-related ocular dysgenesis
1 gene
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1 of 1 corroborated by 2+ sources
PAX6(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Cleft lip and cleft of alveolar process of maxilla Limb-mammary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TP63(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Cleft lip and cleft of alveolar process of maxilla Rudiger syndrome
1 gene
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TP63(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Cleft lip and cleft of alveolar process of maxilla Cleft lip/palate-ectodermal dysplasia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NECTIN1(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 27 →
Cobalamin metabolism disorder Homocystinuria with megaloblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
MMADHC(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Bilateral parasagittal parieto-occipital polymicrogyria Micropenis
1 gene
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1 of 1 corroborated by 2+ sources
FIG4(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 103 →
Bile acid conjugation defect Hypercholanemia
1 gene
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1 of 1 corroborated by 2+ sources
BAAT(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Bile duct calculus Steroid 17-alpha-monooxygenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP17A1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Bile duct calculus Dysbetalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
APOE(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 177 →
Bile duct calculus Serum bilirubin level
1 gene
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1 of 1 corroborated by 2+ sources
UGT1A1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Biliary-renal-neuro-skeletal syndrome Caroli disease
1 gene
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1 of 1 corroborated by 2+ sources
IFT56(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 157 →
Achondroplasia Bladder cancer
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
bleeding disorder, platelet-type, 21 Extraskeletal ewing sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
FLI1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 309 →
Bleeding esophageal varices Esophageal varices
1 gene
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SST(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 270 →
Bmp4-related ocular growth disorder Sacral agenesis
1 gene
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1 of 1 corroborated by 2+ sources
BMP4(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 24 →
Bone marrow diseases Revesz debuse syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TINF2(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 130 →
Bone marrow diseases Revesz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TINF2(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 130 →
Bone marrow diseases dyskeratosis congenita, autosomal dominant 3
1 gene
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1 of 1 corroborated by 2+ sources
TINF2(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 130 →
Bone mineral density quantitative trait locus Worth syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LRP5(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 98 →
Bone mineral density quantitative trait locus polycystic liver disease 4 with or without kidney cysts
1 gene
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1 of 1 corroborated by 2+ sources
LRP5(4)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 98 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.